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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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Type: B.b Conference - BOSC [clear filter]
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Thursday, June 28
 

9:00am PDT

BOSC Session 5: Developer Tools and Libraries Vollum Lecture HallPeter Cock

9:01am PDT

iMADS: A sustainable software collaboration for predicting transcription factor binding specificity Vollum Lecture HallDan Leehr

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:40am PDT

Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli Vollum Lecture HallMichael Heuer

9:45am PDT

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources Vollum Lecture HallHiromu Ochiai

9:50am PDT

Plugging Docker-based visualizations into Django with django_docker_engine Vollum Lecture HallChuck McCallum

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

10:00am PDT

Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native Vollum Lecture HallHilmar Lapp

10:05am PDT

taxa: taxonomic data standards and methods for R and Python Vollum Lecture HallScott Chamberlain

10:10am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

10:50am PDT

BOSC Session 6: Workflows Vollum Lecture HallKarsten Hokamp

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am PDT

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

11:55am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

1:40pm PDT

BOSC Session 7: Project Updates and Late-Breaking Research Vollum Lecture HallChris Fields

1:41pm PDT

OBF update Vollum Lecture HallHilmar Lapp

1:50pm PDT

GSOC update Vollum Lecture HallMichael R. Crusoe

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

2:07pm PDT

Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow Vollum Lecture HallNathan Dunn

2:27pm PDT

Late-Breaking Lightning Talks ⚡ Vollum Lecture Hall

2:52pm PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall
 
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Sunday, June 24
Monday, June 25
Tuesday, June 26
Wednesday, June 27
Thursday, June 28
Friday, June 29
Saturday, June 30
Sunday, July 1
Monday, July 2
Eliot Chapel
Gigantic Brewing
PAB 104
PAB 130
PAB 131
PAB 320
PAB 332
PAB Atrium
Performing Arts Building
Reed College Campus
Reed Commons Cafe
Sitka Dorm, Ground Floor
TBA
Vollum Lecture Hall
Vollum Lounge
Woodstock Neighborhood
  • A. Training
  • B. Conference
  • B.b Conference - BOSC
  • B.g Conference - GCC
  • C. CollaborationFest