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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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Venue: PAB Atrium [clear filter]
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Thursday, June 28
 

8:00am PDT

Conference desk open PAB Atrium

10:20am PDT

Break PAB Atrium Sponsors PAB Atrium

12:10pm PDT

Lunch PAB Atrium Sponsors PAB Atrium

3:00pm PDT

Posters & Demos: Even Numbered PAB Atrium Sponsors PAB Atrium

3:01pm PDT

B02: Tripal Sequence Similarity Search provides efficient protein sequence similarity search for Tripal sites PAB AtriumSean Buehler B04: TreeGenes: enabling visualization and analysis in forest tree genomics PAB AtriumEmily Grau B06: Bioinformatics in the age of AI and personalized medicine: an open source example PAB AtriumMichael Duncan B08: GRADitude: A computational tool for the analysis of Grad-seq data PAB AtriumSilvia Di Giorgio B10: Debarcer2, De-Barcoding and Error Correction of sequencing data containing molecular barcodes designed to handle different library designs. PAB AtriumLawrence Heisler B12: Plugging Docker-based visualizations into Django with django_docker_engine PAB AtriumChuck McCallum B14: Cirrus-NGS: Cloud-optimized compute infrastructure for next generation sequencing analysis PAB AtriumGuorong Xu B16: Infrastructure for coordinating multi-site clinical research projects via REDCap and Synapse PAB AtriumXindi Guo B18: NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data PAB AtriumDavid Siedzik B20: Reproducible data analysis with Snakemake PAB AtriumJohannes Köster B22: Code is Science: a manifesto for open source code in science PAB AtriumYo Yehudi B24: The Hypergraph Algorithms Package PAB AtriumAnna Ritz B26: Fast, sustainable, and secure bioinformatics with Rust-Bio and Rust-Htslib PAB AtriumJohannes Köster B28: Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow PAB AtriumNathan Dunn B30: The Funnel Task Execution Server PAB AtriumAlexander Buchanan B32: iMADS: A sustainable software collaboration for predicting transcription factor binding specificity PAB AtriumDan Leehr B34: Implementation of Nextflow for the automated processing of NovaSeq data sets PAB AtriumNetsanet (Net) Gebremedhin B36: Understanding reproducibility of bioinformatics workflows PAB AtriumSehrish Kanwal B38: You can't spell Cromwell without CWL PAB AtriumJeff Gentry B40: Running portable workflow and container specifications at production scale in the cloud: strategy & best practices PAB AtriumGeet Duggal B42: The GA4GH/DREAM Workflow Execution Challenge PAB AtriumJames Eddy B44: A composable container system for genomic analysis pipelines PAB AtriumYu Xang B46: Bespin: An open source system to run reproducible computational workflows on cloud infrastructure PAB AtriumJohn Bradley D02: Adding R shiny apps as Galaxy interactive environment. A Galaxy-E demo PAB AtriumValintin Chambon D04: A Galaxy Implementation of Next-Generation Clustered Heat Maps for Interactive Exploration of Large-Scale Molecular Profiling Data PAB AtriumBob Brown D06: Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli PAB AtriumMichael Heuer D08: Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native PAB AtriumHilmar Lapp G02: Testing Wide-Area Lustre File Systems for Sharing load in Galaxy PAB AtriumCarrie Ganote G04: Galaxy for AnswerALS on Microsoft Azure and Kubernetes PAB AtriumRC Carter G06: Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) PAB AtriumHans-Rudolf Hotz G08: Collecting data for association genetics: Tripal Plant PopGen Submit pipeline PAB AtriumPeter Richter G10: Coloc-stats: a unified web interface to perform colocalization analysis of genomic features PAB AtriumSveinung Gundersen G12: Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA) PAB AtriumThomas Matthews G14: HIV transmission clustering in Galaxy PAB AtriumDave Bouvier G16: Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteins PAB AtriumPraveen Kumar G18: CRAVAT (Cancer-Related Analysis of Variants Toolkit) integration into Galaxy-P and extension towards proteogenomic studies PAB AtriumRay Sajulga G20: Using Galaxy to analyze TCGA data: the experience of a Brazilian center PAB AtriumThais Hosokawa G22: ARIAWeb: a structural bioinformatics web interface linked to galaxy PAB AtriumFabien Mareuil G24: New tools to enhance the Galaxy-based metabolomics workbench PAB AtriumArthur Eschenlauer G26: ISAcreate: a Galaxy tool for Prospective Data Management with ISA format support - Application to Metabolomics Datasets PAB AtriumPhilippe Rocca-Serra G28: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2018 update) PAB AtriumHervé Ménager G30: Compliance? We don’t need no stinking compliance! PAB AtriumJeffrey Miller G32: Results of an Extended Developer Support consultation with the CloudLaunch project PAB AtriumMarcus Christie
 
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Sunday, June 24
Monday, June 25
Tuesday, June 26
Wednesday, June 27
Thursday, June 28
Friday, June 29
Saturday, June 30
Sunday, July 1
Monday, July 2
Eliot Chapel
Gigantic Brewing
PAB 104
PAB 130
PAB 131
PAB 320
PAB 332
PAB Atrium
Performing Arts Building
Reed College Campus
Reed Commons Cafe
Sitka Dorm, Ground Floor
TBA
Vollum Lecture Hall
Vollum Lounge
Woodstock Neighborhood
  • A. Training
  • B. Conference
  • B.b Conference - BOSC
  • B.g Conference - GCC
  • C. CollaborationFest