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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Andrey Kartashov

Andrey Kartashov

Cincinnati Childrens Hospital
Senior Software Developer
USA
Websitecincinnatichildrens.org/
I am a scientific programmer who performed data analysis in areas ranging from space science to physical chemistry and now for functional genomics. I am the developer behind BioWardrobe, an integrated platform for analysis of epigenomics and transcriptomics data that helps researchers to organize, visualize, analyze, store and share vast amounts of NGS data and results.
Tuesday, June 26
 

9:00am PDT

Conda and Containers PAB 320John Chilton • Bjorn Gruning • Martin Čech

12:30pm PDT

Introduction to Common Workflow Language PAB 320Michael R. Crusoe • Kenzo-Hugo Hillion • Hervé Ménager
 
Wednesday, June 27
 

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

3:01pm PDT

B39: CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform PAB AtriumAndrey Kartashov G29: ELIXIR contributions to the FAIRness of Bioinformatics resources, with bio.tools, Galaxy and CWL PAB AtriumKenzo-Hugo Hillion G33: Refinery: a data management, analysis, and visualization platform utilizing the Galaxy workbench PAB AtriumScott Ouellette
 
Thursday, June 28
 

9:01am PDT

iMADS: A sustainable software collaboration for predicting transcription factor binding specificity Vollum Lecture HallDan Leehr

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

10:50am PDT

BOSC Session 6: Workflows Vollum Lecture HallKarsten Hokamp

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

12:10pm PDT

Lunch PAB Atrium

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz

1:50pm PDT

GSOC update Vollum Lecture HallMichael R. Crusoe

2:07pm PDT

Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow Vollum Lecture HallNathan Dunn

3:01pm PDT

B12: Plugging Docker-based visualizations into Django with django_docker_engine PAB AtriumChuck McCallum B22: Code is Science: a manifesto for open source code in science PAB AtriumYo Yehudi G22: ARIAWeb: a structural bioinformatics web interface linked to galaxy PAB AtriumFabien Mareuil G28: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2018 update) PAB AtriumHervé Ménager

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA