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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Angel Villahoz-Baleta

Angel Villahoz-Baleta

Cornell University
Scientific Programmer
Ithaca, NY
Websitecbsugobii05.tc.cornell.edu/wordpress/
Sunday, June 24
 

3:00pm

Conference desk open PAB Atrium
 
Monday, June 25
 

8:00am

Conference desk open PAB Atrium

9:00am

Intro to Galaxy Administration 1 PAB 320Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am

Lunch Reed Commons Cafe

12:30pm

Intro to Galaxy Administration 2 PAB 320Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

3:00pm

Break Reed Commons Cafe

3:30pm

Intro to Galaxy Administration 3 PAB 320Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

6:00pm

Dinner on your own TBA
 
Tuesday, June 26
 

8:00am

Conference desk open PAB Atrium

9:00am

Conda and Containers PAB 320John Chilton • Björn Grüning • Martin Čech

11:30am

Lunch Reed Commons Cafe

12:30pm

Galaxy Interactive Environments PAB 332Björn Grüning

3:00pm

Break PAB Atrium

3:30pm

Galaxy Architecture PAB 320John Chilton • Nate Coraor

8:00pm

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

8:00am

Conference desk open PAB Atrium

9:00am

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am

Break PAB Atrium Sponsors PAB Atrium

10:50am

GCC Session 2: Galaxy Infrastructure Eliot ChapelSimon Gladman

10:51am

Storage Media Federation for Galaxy Eliot ChapelVahid Jalili

11:10am

From laptop to super-computer: standardizing installation and management of Galaxy Eliot ChapelNuwan Goonesekera

11:30am

Testing Wide-Area Lustre File Systems for Sharing load in Galaxy Eliot ChapelCarrie Ganote

11:50am

Galaxy for AnswerALS on Microsoft Azure and Kubernetes Eliot ChapelRC Carter Lightning Talks ⚡ Eliot Chapel

11:56am

Adding Python 3 support to Galaxy: a status report Eliot ChapelNicola Soranzo

12:02pm

Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports Eliot ChapelMing Chen

12:10pm

Lunch, sponsored by Lenovo + Intel PAB Atrium Sponsors PAB Atrium

12:30pm

BoF: Stable and persistent URIs in biological data integration systems PAB 131Daniela Butano

1:40pm

GCC Session 3: Challenges & Opportunities Eliot ChapelJeremy Goecks

1:41pm

Galaksio, a more user friendly interface for Galaxy using workflows Eliot ChapelTomas Klingström

2:00pm

Large scale analyses with improved dataset collections Eliot ChapelMarius van den Beek

2:20pm

A fruitful year for the Galaxy Training materials Eliot ChapelBérénice Batut

2:40pm

The usegalaxy.* servers: democratizing computational resources for life sciences at a new level Eliot ChapelSimon Gladman

3:00pm

Posters & Demos: Odd Numbered PAB Atrium Sponsors PAB Atrium

4:00pm

Session 4 - Joint BOSC & GCC Vollum Lecture HallBrad Chapman

4:01pm

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
 
Thursday, June 28
 

8:00am

Conference desk open PAB Atrium

9:00am

GCC Session 5: Galaxy in situ Eliot ChapelLaure Quintric

9:01am

Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree Eliot ChapelNic Herndon

9:20am

G-OnRamp: Create UCSC Assembly Hubs and JBrowse/Apollo Archives for Collaborative Eukaryotic Genome Annotations Eliot ChapelLuke Sargent

9:40am

Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA) Eliot ChapelThomas Matthews

10:00am

Galaxy in a proteomics core facility Eliot ChapelJeremy Volkening

10:20am

Break PAB Atrium Sponsors PAB Atrium

10:50am

GCC Session 6: Galaxy in situ Eliot ChapelMaria Doyle

10:51am

Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes Eliot ChapelCaleb Easterly • Pratik Jagtap

11:10am

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline Eliot ChapelNicola Soranzo

11:30am

Galaxy HiCExplorer: HiCExplorer, deepTools3 and pyGenomeTracks Eliot ChapelJoachim Wolff

11:50am

Lightning Talks ⚡ Eliot Chapel Using Galaxy to analyze TCGA data: the experience of a Brazilian center Eliot ChapelThais Talarico

11:56am

ImmPort Galaxy, facilitating analysis and meta-analysis of flow cytometry data Eliot ChapelCristel Thomas

12:02pm

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features Eliot ChapelSveinung Gundersen

12:10pm

Lunch PAB Atrium Sponsors PAB Atrium

1:40pm

GCC Session 7: Community Update(s) Eliot ChapelFrederik Coppens

1:41pm

Galaxy Community Update Eliot ChapelDan Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor

2:10pm

Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteins Eliot ChapelPraveen Kumar Lightning Talks ⚡ Eliot Chapel

2:16pm

A Galaxy Implementation of Next-Generation Clustered Heat Maps for Interactive Exploration of Large-Scale Molecular Profiling Data Eliot ChapelBob Brown

2:22pm

Candidate Gene Methylation quantification (CandiMeth) Within the Galaxy Bioinformatics Interface Eliot ChapelSara-Jayne Thursby

2:28pm

Making Immune Repertoire Sequence Analysis Accessible to Anyone via Galaxy Eliot ChapelBrad Langhost

2:34pm

Galaxy Genome Annotation project: integrating Galaxy and GMOD for genome annotation Eliot ChapelAnthony Bretaudeau

2:40pm

OrthoQuery: A Tripal Module to Assess Gene Family Evolution in Sequenced Gymnosperms Eliot ChapelSumaira Zaman

2:46pm

Galaxy-E, a first step towards collaborative data analysis by citizens Eliot ChapelYvan Le Bras

2:52pm

Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) Eliot ChapelHans-Rudolf Hotz

3:00pm

Posters & Demos: Even Numbered PAB Atrium Sponsors PAB Atrium

4:00pm

Session 8 - Joint BOSC & GCC Closing Vollum Lecture HallPratik Jagtap

4:01pm

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

5:00pm

Conference Closing Vollum Lecture HallBjörn Grüning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko

7:00pm

Conference Dinner Sponsored by Google Cloud TBA
 
Friday, June 29
 

9:00am

GCC OBF CollaborationFest: Core Performing Arts BuildingBjörn Grüning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman