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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Angel Pizarro

Angel Pizarro

Amazon Web Services
Solutions Architect
Philly
Tuesday, June 26
 

9:00am

WDL: the Workflow Description Language Vollum LoungeGeraldine Van der Auwera • Jeff Gentry • Chris Llanwarne

11:30am

Lunch Reed Commons Cafe

3:30pm

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso Galaxy Architecture PAB 320John Chilton • Nate Coraor

8:00pm

Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:01am

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:51am

Storage Media Federation for Galaxy Eliot ChapelVahid Jalili

11:50am

Lightning Talks ⚡ Eliot Chapel

12:30pm

BoF: Let's talk about WDL PAB 332Geraldine Van der Auwera • Chris Llanwarne • Jeff Gentry

2:45pm

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

2:50pm

Reproducible data analysis with Snakemake Vollum Lecture HallJohannes Köster

3:01pm

B31: The Arachne Graph Database Server PAB AtriumKyle Ellrott B39: CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform PAB AtriumAndrey Kartashov B41: Scaling bioinformatics analysis using Nextflow and AWS PAB AtriumFrancesco Strozzi

4:20pm

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams

6:00pm

BOSC & GCC Social Mixer | by Lifebit Woodstock NeighborhoodLifebit

8:00pm

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden
 
Thursday, June 28
 

9:20am

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:40am

Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli Vollum Lecture HallMichael Heuer

9:55am

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

11:35am

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

4:01pm

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

7:00pm

Conference Dinner Sponsored by Google Cloud TBA