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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
Registration
,
lodging
and
childcare
information
Sponsorships
,
BoFs
,
Frequently Asked Questions (FAQ)
,
#GCCBOSC
/
Chat
Schedule
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A. Training
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Break / Social / Networking
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Session
B. Conference
All
Birds-of-a-Feather
Break / Social / Networking
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Posters + Demos
Session
Sponsor
Talk
B.b Conference - BOSC
All
Lightning
Session
Talk
B.g Conference - GCC
All
Lightning
Session
Talk
C. CollaborationFest
All
Birds-of-a-Feather
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View analytic
Angel Pizarro
Amazon Web Services
Solutions Architect
Philly
My Friends
Tuesday
, June 26
9:00am
WDL: the Workflow Description Language
Vollum Lounge
Geraldine Van der Auwera • Jeff Gentry • Chris Llanwarne
11:30am
Lunch
Reed Commons Cafe
3:30pm
Command line workflow management systems: Snakemake and Nextflow
Vollum Lounge
Johannes Köster • Paolo Di Tommaso
Galaxy Architecture
PAB 320
John Chilton • Nate Coraor
8:00pm
Opening & Welcome
Vollum Lecture Hall
Dave Clements • Nomi Harris
8:10pm
Opening Keynote: Tracy K. Teal--"Democratizing Data"
Vollum Lecture Hall
Tracy K. Teal
Wednesday
, June 27
9:01am
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:51am
Storage Media Federation for Galaxy
Eliot Chapel
Vahid Jalili
11:50am
Lightning Talks ⚡
Eliot Chapel
12:30pm
BoF: Let's talk about WDL
PAB 332
Geraldine Van der Auwera • Chris Llanwarne • Jeff Gentry
2:45pm
NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data
Vollum Lecture Hall
David Siedzik
2:50pm
Reproducible data analysis with Snakemake
Vollum Lecture Hall
Johannes Köster
3:01pm
B31: The Arachne Graph Database Server
PAB Atrium
Kyle Ellrott
B39: CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
PAB Atrium
Andrey Kartashov
B41: Scaling bioinformatics analysis using Nextflow and AWS
PAB Atrium
Francesco Strozzi
4:20pm
Panel: Training and Documentation in Bioinformatics
Vollum Lecture Hall
Brad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
6:00pm
BOSC & GCC Social Mixer | by Lifebit
Woodstock Neighborhood
Lifebit
8:00pm
BoF: Nextflow Gathering
Sitka Dorm, Ground Floor
Evan Floden
Thursday
, June 28
9:20am
The Funnel Task Execution Server
Vollum Lecture Hall
Alexander Buchanan
9:40am
Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli
Vollum Lecture Hall
Michael Heuer
9:55am
The Arachne Graph Database Server
Vollum Lecture Hall
Kyle Ellrott
11:35am
Bespin: An open source system to run reproducible computational workflows on cloud infrastructure
Vollum Lecture Hall
John Bradley
11:40am
CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
Vollum Lecture Hall
Andrey Kartashov
11:45am
Scaling bioinformatics analysis using Nextflow and AWS
Vollum Lecture Hall
Francesco Strozzi
4:01pm
Closing Keynote: Confound it! Reproducible biology from "omics" data analysis
Vollum Lecture Hall
Lucia Peixoto
7:00pm
Conference Dinner Sponsored by Google Cloud
TBA
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Southeast Reed College Place, Portland, Oregon, United States
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Eliot Chapel
Gigantic Brewing
PAB 104
PAB 130
PAB 131
PAB 320
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PAB Atrium
Performing Arts Building
Reed College Campus
Reed Commons Cafe
Sitka Dorm, Ground Floor
TBA
Vollum Lecture Hall
Vollum Lounge
Woodstock Neighborhood
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C. CollaborationFest
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