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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

CD

Colin Diesh

University of California, Berkeley
Wednesday, June 27
 

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:51am PDT

Cloud-based data ingest for the Human Cell Atlas Vollum Lecture HallDaniel Vaughan

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:20am PDT

Open Humans - connecting, sharing and analyzing personal data that enables community-driven research Vollum Lecture HallBastian Greshake Tzovaras

11:40am PDT

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:45am PDT

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results Vollum Lecture HallHervé Ménager

12:30pm PDT

BoF: JBrowse PAB 104Rob Buels

1:41pm PDT

miRTop: An open source community project for the development of a unified format file for miRNA data Vollum Lecture HallLorena Pantano Rubino

2:00pm PDT

Large scale analyses with improved dataset collections Eliot ChapelMarius van den Beek

3:01pm PDT

B03: CRI iAtlas: an interactive portal for immuno-oncology research PAB AtriumJames Eddy B07: Classification of short read alignments from xenograft samples PAB AtriumLawrence Heisler B13: READemption - from reads to knowledge PAB AtriumTill Sauerwein B25: The GTrack ecosystem: expressive file formats for genomic track data and metadata - through compilation, exchange, storage and analysis PAB AtriumSveinung Gundersen B33: BioThings Hub: An API Gateway for Biomedical Knowledge PAB AtriumSébastien Lelong B35: Modernising somatic mutation calling pipelines with Open Source tools and Containers. PAB AtriumMr Keiran M Raine G21: The Mammalian Ortholog and Annotation Database: enhanced ortholog information with an accurate identifier mapping between NCBI and Ensembl accessible from a Galaxy-server PAB AtriumJochen Bick
 
Thursday, June 28
 

9:01am PDT

iMADS: A sustainable software collaboration for predicting transcription factor binding specificity Vollum Lecture HallDan Leehr

9:20am PDT

G-OnRamp: Create UCSC Assembly Hubs and JBrowse/Apollo Archives for Collaborative Eukaryotic Genome Annotations Eliot ChapelLuke Sargent

11:10am PDT

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline Eliot ChapelNicola Soranzo

11:50am PDT

Using Galaxy to analyze TCGA data: the experience of a Brazilian center Eliot ChapelThais Talarico

1:41pm PDT

OBF update Vollum Lecture HallHilmar Lapp

2:07pm PDT

Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow Vollum Lecture HallNathan Dunn

2:28pm PDT

Making Immune Repertoire Sequence Analysis Accessible to Anyone via Galaxy Eliot ChapelBrad Langhorst

2:34pm PDT

Galaxy Genome Annotation project: integrating Galaxy and GMOD for genome annotation Eliot ChapelAnthony Bretaudeau

3:01pm PDT

G30: Compliance? We don’t need no stinking compliance! PAB AtriumJeffrey Miller

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto