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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Evan Floden

Evan Floden

Barcelona, Spain
Sunday, June 24
 

3:00pm PDT

Conference desk open PAB Atrium
 
Monday, June 25
 

6:00pm PDT

Dinner on your own TBA
 
Tuesday, June 26
 

9:00am PDT

WDL: the Workflow Description Language Vollum LoungeGeraldine Van der Auwera • Jeff Gentry • Chris Llanwarne

11:30am PDT

Lunch Reed Commons Cafe

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso

8:00pm PDT

Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

12:10pm PDT

Lunch, sponsored by Lenovo + Intel PAB Atrium

1:40pm PDT

BOSC Session 3: All About Data Vollum Lecture HallBastian Greshake Tzovaras

1:41pm PDT

miRTop: An open source community project for the development of a unified format file for miRNA data Vollum Lecture HallLorena Pantano Rubino

2:00pm PDT

Reproducible big data science: A case study in continuous FAIRness Vollum Lecture HallRavi K. Madduri

2:20pm PDT

InterMine 2.0: More than fifteen years of open biological data integration Vollum Lecture HallYo Yehudi

2:40pm PDT

GRADitude: A computational tool for the analysis of Grad-seq data Vollum Lecture HallSilvia Di Giorgio

2:45pm PDT

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

2:50pm PDT

Reproducible data analysis with Snakemake Vollum Lecture HallJohannes Köster

2:55pm PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

4:00pm PDT

Session 4 - Joint BOSC & GCC Vollum Lecture HallBrad Chapman

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm PDT

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams

5:40pm PDT

Dinner on your own (or join a BoF) TBA

8:00pm PDT

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden
 
Thursday, June 28
 

9:00am PDT

BOSC Session 5: Developer Tools and Libraries Vollum Lecture HallPeter Cock

9:01am PDT

iMADS: A sustainable software collaboration for predicting transcription factor binding specificity Vollum Lecture HallDan Leehr

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:40am PDT

Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli Vollum Lecture HallMichael Heuer

9:45am PDT

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources Vollum Lecture HallHiromu Ochiai

9:50am PDT

Plugging Docker-based visualizations into Django with django_docker_engine Vollum Lecture HallChuck McCallum

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

10:00am PDT

Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native Vollum Lecture HallHilmar Lapp

10:05am PDT

taxa: taxonomic data standards and methods for R and Python Vollum Lecture HallScott Chamberlain

10:10am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

10:50am PDT

BOSC Session 6: Workflows Vollum Lecture HallKarsten Hokamp

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am PDT

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

11:55am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

12:10pm PDT

Lunch PAB Atrium

4:00pm PDT

Session 8 - Joint BOSC & GCC Closing Vollum Lecture HallPratik Jagtap

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

5:00pm PDT

Conference Closing Vollum Lecture HallBjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA
 

My Moderators Sessions

Wednesday, June 27
 

8:00pm PDT

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden