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The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There are two days of training, a two day meeting, and two to four days of intense collaboration.  The meeting will feature joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC brings together the widest possible community of bioinformatics developers and practitioners into a single event.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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Monday, June 25 • 12:30pm - 3:00pm
RNA-Seq Analysis with Galaxy

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This workshop will introduce the concepts behind transcriptomics with NGS data and how to analyze this data in Galaxy. Specifically, this workshop will focus on de novo transcriptome reconstruction of RNA-seq data with the following goals:
  • comprehensive identification of all transcripts across an experiment
  • appropriately annotating classes of transcripts
  • generating abundance estimates across a transcriptome
  • significance testing of differentially expressed transcripts
  • visualisation of reads and transcript structures
Second of 3 sessions in the Introduction to Using Galaxy series.
Prerequisites:
  • a general knowledge of Galaxy (for example, you should be familiar with the material in Galaxy 101 or have attended Introduction to Galaxy).
  • a wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best.

Speakers
avatar for Anton Nekrutenko

Anton Nekrutenko

Galaxy Project, Penn State University
Penn State University


Monday June 25, 2018 12:30pm - 3:00pm
PAB 320 Performing Arts Building, Reed Campus