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The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There are two days of training, a two day meeting, and two to four days of intense collaboration.  The meeting will feature joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC brings together the widest possible community of bioinformatics developers and practitioners into a single event.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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Tuesday, June 26 • 9:00am - 11:30am
Community built analyses that run everywhere with bcbio

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Key:  -  | XB | IP |  -  |  -  | CL

bcbio
 is community built analyses for germline and somatic variant calling, RNA-seq, single cell, smallRNA and ChIP-seq. This workshop will focus on using bcbio to run analysis pipelines in heterogenous environments -- local machines, HPC, cloud providers and commercial services (and also hopefully Galaxy). Attendees will learn how to practically run their analyses on their platform of choice, while discussing how the community can contribute to building, sharing and maintaining workflows across multiple platforms. Recent presentations of bcbio show some of the topics we plan to cover.

Prerequisites


Speakers
avatar for Brad Chapman

Brad Chapman

Bioinformatics Core, Harvard Chan School
Biologist and Programmer
RS

Radhika S. Khetani

Harvard T.H. Chan School of Public Health
avatar for Lorena Pantano Rubino

Lorena Pantano Rubino

Research Scientist, Harvard Chan School
I work with small RNAs, mainly detected through sequencing technology. I like visualization and multi-omic integration methods. :)


Tuesday June 26, 2018 9:00am - 11:30am
Training Venue 2