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The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are joining together for a unified event to be held in Portland, Oregon, United States, June 25-30, 2018.  The event features two days of training, a two day meeting, and finish with two or four days of intense collaboration at the GCC OBF CollaborationFest Core and Encore events.  The meeting will feature joint and parallel sessions, and shared keynotes, poster and demo sessions, and social events.  Colocating GCC and BOSC will bring together the widest possible community of bioinformatics developers and practitioners into a single place.  At this event the whole will be greater than the sum of the parts.

The event is organized by Oregon Health & Science University and will be held at Reed College, a small liberal arts college in Portland. Conference housing is available in two Reed College residence hall complexesPortland is a vibrant city in the American Northwest, close to the Cascade Mountains, the Oregon Coast, and the Columbia River. 

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Tuesday, June 26 • 9:00am - 11:30am
Community built analyses that run everywhere with bcbio

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Key:  -  | XB | IP |  -  |  -  | CL

 is community built analyses for germline and somatic variant calling, RNA-seq, single cell, smallRNA and ChIP-seq. This workshop will focus on using bcbio to run analysis pipelines in heterogenous environments -- local machines, HPC, cloud providers and commercial services (and also hopefully Galaxy). Attendees will learn how to practically run their analyses on their platform of choice, while discussing how the community can contribute to building, sharing and maintaining workflows across multiple platforms. Recent presentations of bcbio show some of the topics we plan to cover.


avatar for Brad Chapman

Brad Chapman

Bioinformatics Core, Harvard Chan School
Biologist and Programmer

Radhika S. Khetani

Harvard T.H. Chan School of Public Health

Lorena Pantano Rubino

Harvard T.H. Chan School of Public Health

Tuesday June 26, 2018 9:00am - 11:30am
Training Venue 2