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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.


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Tuesday, June 26 • 9:00am - 11:30am
Handling integrated biological data using Python (or R) and InterMine

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→ Tutorial and slides

Key:  BB | XB |  -  |  -  | GG | CL

This tutorial will guide you through loading and analyzing integrated biological data (generally genomic or proteomic) in InterMine via an API in Python or R. Topics covered will include automatically generating code to perform queries, customising the code to meet your needs, and automated analysis of sets, e.g gene sets, including enrichment statistics. Skills gained can be re-used in any of the dozens of InterMines available, covering a broad range of organisms and dedicated purposes, from model organisms to plants, drug targets, and mitochondrial DNA.
Prerequisites
  • Basic Python or R skills are advantageous but not required.
  • WiFi-enabled laptop with Python or R Studio.

Speakers
avatar for Daniela Butano

Daniela Butano

Research SofwareEngineer, InterMine, University of Cambridge
LR

Leyla Ruzicka

ZFIN, University of Oregon
avatar for Yo Yehudi

Yo Yehudi

Software Developer, InterMine (University of Cambridge)
Integrated genomic data (InterMine)


Tuesday June 26, 2018 9:00am - 11:30am
PAB 104 Performing Arts Building, Reed Campus

Attendees (12)