Name: Practical use of the Galaxy API command line tools
Start: 2018-06-26T12:30:00-0700
End: 2018-06-26T15:00:00-0700

The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018. There will be two days of training, a two+ day meeting, and four days of intense collaboration. The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events. GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

Videos: BOSC, GCC; and Program PDF
Registration, lodging and childcare information
Sponsorships, BoFs, Frequently Asked Questions (FAQ),
#GCCBOSC / Chat

Back To Schedule

Practical use of the Galaxy API command line tools

→ Slides
→ All Training Material

Key: - | XB | IP | TD | - | CL

How to use the Galaxy API to automate workflows.
Galaxy has an always-growing API that allows for external programs to upload and download data, manage histories and datasets, run tools and workflows, and even perform admin tasks. This session will cover various approaches to access the API, in particular using the BioBlend Python library.
Prerequisites

Unix command line
Basic understanding of Galaxy from a developer point of view.
Python programming.
A wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best.

Speakers