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The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There are two days of training, a two day meeting, and two to four days of intense collaboration.  The meeting will feature joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC brings together the widest possible community of bioinformatics developers and practitioners into a single event.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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Tuesday, June 26 • 12:30pm - 3:00pm
Practical use of the Galaxy API command line tools

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Key:  -  | XB | IP | TD |  -  | CL

How to use the Galaxy API to automate workflows.
Galaxy has an always-growing API that allows for external programs to upload and download data, manage histories and datasets, run tools and workflows, and even perform admin tasks. This session will cover various approaches to access the API, in particular using the BioBlend Python library.
Prerequisites
  • Unix command line
  • Basic understanding of Galaxy from a developer point of view.
  • Python programming.
  • A wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best.

Speakers
avatar for Dannon Baker

Dannon Baker

Galaxy Project, Johns Hopkins University
Galaxy Project, Johns Hopkins University
avatar for Marius van den Beek

Marius van den Beek

Institut Curie, Paris
avatar for Nicola Soranzo

Nicola Soranzo

Earlham Institute


Tuesday June 26, 2018 12:30pm - 3:00pm
Training Venue 4