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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Gerard Lazo

Gerard Lazo

USDA-ARS
Geneticist
Albany, CA
Websitehttps://wheat.pw.usda.gov
GrainGenes database project: bioinformatics for small grain crops (wheat, barley, rye, oat). Interest in kubernetes containers, Tripal modules for Drupal CMS, jBrowse genome browser, Jupyter Notebook/Lab, Galaxy workflows for Internet2 environment, etc...
Monday, June 25
 

8:00am

Training Day 1 - Galaxy Performing Arts Building

9:00am

Intro to Galaxy Administration 1 PAB 320Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am

Lunch Reed Commons Cafe

12:30pm

RNA-Seq Analysis with Galaxy PAB 104Anton Nekrutenko

3:30pm

Galaxy For Proteogenomics ! PAB 104Tim Griffin • Pratik Jagtap • James Johnson • Praveen Kumar • Subina Mehta

6:00pm

Dinner on your own TBA

7:30pm

Bioinformatics Training and Education with the Galaxy Training Network PAB 320Bérénice Batut
 
Tuesday, June 26
 

8:00am

Training Day 2 - All topics Reed College Campus

9:00am

Handling integrated biological data using Python (or R) and InterMine PAB 104Daniela Butano • Leyla Ruzicka • Yo Yehudi

12:30pm

Practical use of the Galaxy API command line tools Vollum LoungeDannon Baker • Marius van den Beek • Nicola Soranzo

3:30pm

GATK4: What's new and how to run it PAB 332Geraldine Van der Auwera • Kate Noblett

6:20pm

Birds-of-a-Feather (BoFs), With Your Dinner! TBA

8:00pm

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:50am

BOSC: Session 2: Translational & Medical Informatics Vollum Lecture HallHilmar Lapp

10:51am

Storage Media Federation for Galaxy Eliot ChapelVahid Jalili

11:10am

From laptop to super-computer: standardizing installation and management of Galaxy Eliot ChapelNuwan Goonesekera

11:40am

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:45am

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results Vollum Lecture HallHervé Ménager

11:50am

Building a community menagerie of automated variant validations Vollum Lecture HallBrad Chapman Galaxy for AnswerALS on Microsoft Azure and Kubernetes Eliot ChapelRC Carter

11:55am

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

11:56am

Adding Python 3 support to Galaxy: a status report Eliot ChapelNicola Soranzo

12:30pm

BoF: JBrowse PAB 104Rob Buels BoF: Stable and persistent URIs in biological data integration systems PAB 131Daniela Butano

2:00pm

Reproducible big data science: A case study in continuous FAIRness Vollum Lecture HallRavi K. Madduri

2:20pm

InterMine 2.0: More than fifteen years of open biological data integration Vollum Lecture HallYo Yehudi