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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Hon Tran

Hon Tran

IDT Biologika GmbH
Senior Bioinformatics Scientist
Germany
Monday, June 25
 

9:00am PDT

Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

12:30pm PDT

Intro to Galaxy Administration 2 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

3:30pm PDT

Intro to Galaxy Administration 3 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
 
Tuesday, June 26
 

9:00am PDT

WDL: the Workflow Description Language Vollum LoungeGeraldine Van der Auwera • Jeff Gentry • Chris Llanwarne

12:30pm PDT

Introduction to Common Workflow Language PAB 320Michael R. Crusoe • Kenzo-Hugo Hillion • Hervé Ménager

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso

8:00pm PDT

Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Sponsors PAB Atrium

10:51am PDT

Storage Media Federation for Galaxy Eliot ChapelVahid Jalili

11:10am PDT

From laptop to super-computer: standardizing installation and management of Galaxy Eliot ChapelNuwan Goonesekera

11:30am PDT

Testing Wide-Area Lustre File Systems for Sharing load in Galaxy Eliot ChapelCarrie Ganote

11:50am PDT

Galaxy for AnswerALS on Microsoft Azure and Kubernetes Eliot ChapelRC Carter Lightning Talks ⚡ Eliot Chapel

11:56am PDT

Adding Python 3 support to Galaxy: a status report Eliot ChapelNicola Soranzo

12:02pm PDT

Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports Eliot ChapelMing Chen

1:41pm PDT

Galaksio, a more user friendly interface for Galaxy using workflows Eliot ChapelTomas Klingström

2:00pm PDT

Large scale analyses with improved dataset collections Eliot ChapelMarius van den Beek

3:01pm PDT

B05: One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio PAB AtriumPeter Amstutz D01: From laptop to super-computer: standardizing installation and management of Galaxy PAB AtriumNuwan Goonesekera D09: taxa: taxonomic data standards and methods for R and Python PAB AtriumScott Chamberlain G05: Galaksio, a more user friendly interface for Galaxy using workflows PAB AtriumTomas Klingström G13: Bacterial genomics in Galaxy PAB AtriumDelphine Lariviere G27: BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations PAB AtriumMatúš Kalas G33: Refinery: a data management, analysis, and visualization platform utilizing the Galaxy workbench PAB AtriumScott Ouellette

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams
 
Thursday, June 28
 

9:40am PDT

Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA) Eliot ChapelThomas Matthews

10:05am PDT

taxa: taxonomic data standards and methods for R and Python Vollum Lecture HallScott Chamberlain

1:41pm PDT

Galaxy Community Update Eliot ChapelDaniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor

2:16pm PDT

A Galaxy Implementation of Next-Generation Clustered Heat Maps for Interactive Exploration of Large-Scale Molecular Profiling Data Eliot ChapelBob Brown

2:52pm PDT

Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) Eliot ChapelHans-Rudolf Hotz

3:01pm PDT

B20: Reproducible data analysis with Snakemake PAB AtriumJohannes Köster B26: Fast, sustainable, and secure bioinformatics with Rust-Bio and Rust-Htslib PAB AtriumJohannes Köster B36: Understanding reproducibility of bioinformatics workflows PAB AtriumSehrish Kanwal D02: Adding R shiny apps as Galaxy interactive environment. A Galaxy-E demo PAB AtriumValintin Chambon G06: Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) PAB AtriumHans-Rudolf Hotz G12: Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA) PAB AtriumThomas Matthews