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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for jay pleyte

jay pleyte

Oregon Health and Sciences University
Senior Software Engineer
Portland, OR
Websitehttps://knightdxlabs.ohsu.edu
I am a senior software engineer working for OHSU's Knight Diagnostics Laboratory. I am also a student at OHSU, pursuing my masters in Bioinformatics and Computational Biology.
Monday, June 25
 

8:00am PDT

Training Day 1 - Galaxy Performing Arts Building

9:00am PDT

Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Intro to Galaxy Administration 2 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

3:00pm PDT

Break Reed Commons Cafe

3:30pm PDT

Galaxy For Proteogenomics ! PAB 104Timothy J. Griffin • Pratik Jagtap • James Johnson • Praveen Kumar • Subina Mehta Intro to Galaxy Administration 3 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

6:00pm PDT

Dinner on your own TBA

7:30pm PDT

Bioinformatics Training and Education with the Galaxy Training Network PAB 320Bérénice Batut
 
Tuesday, June 26
 

8:00am PDT

Training Day 2 - All topics Reed College Campus

9:00am PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell I PAB 131Tracy K. Teal

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell II PAB 131Tracy K. Teal

3:00pm PDT

Break PAB Atrium

3:30pm PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell III PAB 131Tracy K. Teal GATK4: What's new and how to run it PAB 332Geraldine Van der Auwera • Kate Noblett

6:20pm PDT

Birds-of-a-Feather (BoFs), With Your Dinner! TBA BoF: Galaxy for proteomics interest group Reed Commons CafeTimothy J. Griffin • Pratik Jagtap

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Break PAB Atrium Sponsors PAB Atrium

11:50am PDT

Lightning Talks ⚡ Eliot Chapel

11:56am PDT

Adding Python 3 support to Galaxy: a status report Eliot ChapelNicola Soranzo

12:02pm PDT

Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports Eliot ChapelMing Chen
 
Thursday, June 28
 

9:00am PDT

BOSC Session 5: Developer Tools and Libraries Vollum Lecture HallPeter Cock

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

10:00am PDT

Galaxy in a proteomics core facility Eliot ChapelJeremy Volkening

10:20am PDT

Break PAB Atrium

10:51am PDT

Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes Eliot ChapelCaleb Easterly • Pratik Jagtap

11:10am PDT

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline Eliot ChapelNicola Soranzo

11:30am PDT

Galaxy HiCExplorer: HiCExplorer, deepTools3 and pyGenomeTracks Eliot ChapelJoachim Wolff

11:50am PDT

Using Galaxy to analyze TCGA data: the experience of a Brazilian center Eliot ChapelThais Talarico

11:56am PDT

ImmPort Galaxy, facilitating analysis and meta-analysis of flow cytometry data Eliot ChapelCristel Thomas

12:02pm PDT

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features Eliot ChapelSveinung Gundersen

12:30pm PDT

BoF: Galaxy Training Material: Let's improve the contributions! PAB 130Bérénice Batut

1:41pm PDT

Galaxy Community Update Eliot ChapelDaniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

2:10pm PDT

Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteins Eliot ChapelPraveen Kumar

2:16pm PDT

A Galaxy Implementation of Next-Generation Clustered Heat Maps for Interactive Exploration of Large-Scale Molecular Profiling Data Eliot ChapelBob Brown

2:22pm PDT

Candidate Gene Methylation quantification (CandiMeth) Within the Galaxy Bioinformatics Interface Eliot ChapelSara-Jayne Thursby

2:34pm PDT

Galaxy Genome Annotation project: integrating Galaxy and GMOD for genome annotation Eliot ChapelAnthony Bretaudeau

2:40pm PDT

OrthoQuery: A Tripal Module to Assess Gene Family Evolution in Sequenced Gymnosperms Eliot ChapelSumaira Zaman

2:52pm PDT

Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) Eliot ChapelHans-Rudolf Hotz

3:01pm PDT

B22: Code is Science: a manifesto for open source code in science PAB AtriumYo Yehudi

4:00pm PDT

Session 8 - Joint BOSC & GCC Closing Vollum Lecture HallPratik Jagtap

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA