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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Jean-Paul Courneya

Jean-Paul Courneya

University of Maryland - Baltimore HS/HSL
Bioinformationist
jpcourneya@hshsl.umaryland.edu
Websitehshsl.umaryland.edu/
RNA seq, Galaxy Administration, learning bioinformatics, skateboarding.
Sunday, June 24
 

3:00pm PDT

Conference desk open PAB Atrium
 
Monday, June 25
 

9:00am PDT

Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Intro to Galaxy Administration 2 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

3:30pm PDT

Intro to Galaxy Administration 3 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

6:00pm PDT

Dinner on your own TBA

7:30pm PDT

Bioinformatics Training and Education with the Galaxy Training Network PAB 320Bérénice Batut
 
Tuesday, June 26
 

9:00am PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell I PAB 131Tracy K. Teal

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell II PAB 131Tracy K. Teal

3:00pm PDT

Break PAB Atrium

3:30pm PDT

Data Carpentry Genomics Workshop: Data Organization and Automation with Shell III PAB 131Tracy K. Teal

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Break PAB Atrium

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:10am PDT

From laptop to super-computer: standardizing installation and management of Galaxy Eliot ChapelNuwan Goonesekera

12:02pm PDT

Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports Eliot ChapelMing Chen

12:10pm PDT

Lunch, sponsored by Lenovo + Intel PAB Atrium

2:20pm PDT

A fruitful year for the Galaxy Training materials Eliot ChapelBérénice Batut

2:45pm PDT

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

2:50pm PDT

Reproducible data analysis with Snakemake Vollum Lecture HallJohannes Köster

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm PDT

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams

5:40pm PDT

Dinner on your own (or join a BoF) TBA
 
Thursday, June 28
 

11:56am PDT

ImmPort Galaxy, facilitating analysis and meta-analysis of flow cytometry data Eliot ChapelCristel Thomas

12:10pm PDT

Lunch PAB Atrium

1:41pm PDT

Galaxy Community Update Eliot ChapelDaniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

2:10pm PDT

Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteins Eliot ChapelPraveen Kumar

2:28pm PDT

Making Immune Repertoire Sequence Analysis Accessible to Anyone via Galaxy Eliot ChapelBrad Langhorst

2:46pm PDT

Galaxy-E, a first step towards collaborative data analysis by citizens Eliot ChapelYvan Le Bras

2:52pm PDT

Galaxy2Shiny2Galaxy - Combining Galaxy with Shiny (and doing other bad things) Eliot ChapelHans-Rudolf Hotz

3:00pm PDT

Posters & Demos: Even Numbered PAB Atrium

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA