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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
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,
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and
childcare
information
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,
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,
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John Chilton
PSU
State College, Pennsylvania
Tuesday
, June 26
9:00am PDT
Conda and Containers
PAB 320
John Chilton • Bjorn Gruning • Martin Čech
11:30am PDT
Lunch
Reed Commons Cafe
3:30pm PDT
Galaxy Architecture
PAB 320
John Chilton • Nate Coraor
6:20pm PDT
BoF: Galaxy for proteomics interest group
Reed Commons Cafe
Timothy J. Griffin • Pratik Jagtap
8:00pm PDT
Joint BOSC & GCC: Opening Session
Vollum Lecture Hall
Nicole Vasilevsky • Heather Wiencko
8:10pm PDT
Opening Keynote: Tracy K. Teal--"Democratizing Data"
Vollum Lecture Hall
Tracy K. Teal
Wednesday
, June 27
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:00am PDT
The journey of a team of engineers in learning packaging technology
Vollum Lecture Hall
Patrick Durand • Valentin Marcon • Laure Quintric
10:50am PDT
GCC Session 2: Galaxy Infrastructure
Eliot Chapel
Simon Gladman
10:51am PDT
Storage Media Federation for Galaxy
Eliot Chapel
Vahid Jalili
11:10am PDT
From laptop to super-computer: standardizing installation and management of Galaxy
Eliot Chapel
Nuwan Goonesekera
11:30am PDT
Testing Wide-Area Lustre File Systems for Sharing load in Galaxy
Eliot Chapel
Carrie Ganote
11:50am PDT
Galaxy for AnswerALS on Microsoft Azure and Kubernetes
Eliot Chapel
RC Carter
11:56am PDT
Adding Python 3 support to Galaxy: a status report
Eliot Chapel
Nicola Soranzo
12:02pm PDT
Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports
Eliot Chapel
Ming Chen
1:40pm PDT
GCC Session 3: Challenges & Opportunities
Eliot Chapel
Jeremy Goecks
1:41pm PDT
Galaksio, a more user friendly interface for Galaxy using workflows
Eliot Chapel
Tomas Klingström
2:00pm PDT
Large scale analyses with improved dataset collections
Eliot Chapel
Marius van den Beek
2:20pm PDT
A fruitful year for the Galaxy Training materials
Eliot Chapel
Bérénice Batut
2:40pm PDT
The usegalaxy.* servers: democratizing computational resources for life sciences at a new level
Eliot Chapel
Simon Gladman
3:00pm PDT
Posters & Demos: Odd Numbered
PAB Atrium
3:01pm PDT
G01: Galaxy-E, a first stage towards collaborative data analysis by citizens
PAB Atrium
Yvan Le Bras
G03: Predicting Galaxy Tool Runtimes with Random Forests
PAB Atrium
Anastasia Tyryshkina
G05: Galaksio, a more user friendly interface for Galaxy using workflows
PAB Atrium
Tomas Klingström
G09: EWAS-Galaxy: a tool suite for population epigenetics integrated into the Galaxy
PAB Atrium
Krzysztof Poterlowicz
G11: Candidate Gene Methylation quantification (CandiMeth) Within the Galaxy Bioinformatics Interface
PAB Atrium
Sara-Jayne Thursby
G13: Bacterial genomics in Galaxy
PAB Atrium
Delphine Lariviere
G15: Galaxy in a proteomics core facility
PAB Atrium
Jeremy Volkening
G17: Evaluation of moFF and FlashLFQ for label-free peptide quantification in proteomic workflows within the Galaxy-P framework
PAB Atrium
Subina Mehta
G25: VKMZ: Visualizing Metabolomics on a van Krevelen Diagram through Galaxy
PAB Atrium
Mark Esler
G27: BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations
PAB Atrium
Matúš Kalas
G29: ELIXIR contributions to the FAIRness of Bioinformatics resources, with bio.tools, Galaxy and CWL
PAB Atrium
Kenzo-Hugo Hillion
G31: A fruitful year for the Galaxy Training materials
PAB Atrium
Bérénice Batut
G33: Refinery: a data management, analysis, and visualization platform utilizing the Galaxy workbench
PAB Atrium
Scott Ouellette
4:01pm PDT
Improving the Bioinformatics Curriculum
Vollum Lecture Hall
Jason Williams
4:20pm PDT
Panel: Training and Documentation in Bioinformatics
Vollum Lecture Hall
Brad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
5:40pm PDT
BoF: Sharing and Leveraging Galaxy Tool Execution Data
TBA
Martin Čech • Anastasia Tyryshkina
6:00pm PDT
BOSC & GCC Social Mixer | by Lifebit
Woodstock Neighborhood
Lifebit
Thursday
, June 28
10:50am PDT
BOSC Session 6: Workflows
Vollum Lecture Hall
Karsten Hokamp
10:51am PDT
CWLProv - Interoperable retrospective provenance capture and its challenges
Vollum Lecture Hall
Farah Zaib Khan
11:10am PDT
Running portable workflow and container specifications at production scale in the cloud: strategy & best practices
Vollum Lecture Hall
Geet Duggal
11:30am PDT
The GA4GH/DREAM Workflow Execution Challenge
Vollum Lecture Hall
James Eddy
11:35am PDT
Bespin: An open source system to run reproducible computational workflows on cloud infrastructure
Vollum Lecture Hall
John Bradley
11:40am PDT
CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
Vollum Lecture Hall
Andrey Kartashov
11:45am PDT
Scaling bioinformatics analysis using Nextflow and AWS
Vollum Lecture Hall
Francesco Strozzi
11:50am PDT
One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio
Vollum Lecture Hall
Peter Amstutz
12:02pm PDT
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
Eliot Chapel
Sveinung Gundersen
12:30pm PDT
BoF: Common Workflow Language community chat
PAB 332
John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz
1:40pm PDT
GCC Session 7: Community Update(s)
Eliot Chapel
Frederik Coppens
1:41pm PDT
Galaxy Community Update
Eliot Chapel
Daniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor
4:01pm PDT
Closing Keynote: Confound it! Reproducible biology from "omics" data analysis
Vollum Lecture Hall
Lucia Peixoto
5:00pm PDT
Conference Closing
Vollum Lecture Hall
Bjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko
Friday
, June 29
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Bjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
Saturday
, June 30
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Sunday
, July 1
9:00am PDT
GCC OBF CollaborationFest: Encore
Performing Arts Building
Monday
, July 2
9:00am PDT
GCC OBF CollaborationFest: Encore
Performing Arts Building
My Moderators Sessions
Thursday
, June 28
12:30pm PDT
BoF: Common Workflow Language community chat
PAB 332
John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz
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GCC BOSC 2018
America/Los Angeles
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Gigantic Brewing
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Reed College Campus
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Sitka Dorm, Ground Floor
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