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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for John Chilton

John Chilton

PSU
State College, Pennsylvania
Tuesday, June 26
 

9:00am PDT

Conda and Containers PAB 320John Chilton • Bjorn Gruning • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

3:30pm PDT

Galaxy Architecture PAB 320John Chilton • Nate Coraor

6:20pm PDT

BoF: Galaxy for proteomics interest group Reed Commons CafeTimothy J. Griffin • Pratik Jagtap

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:50am PDT

GCC Session 2: Galaxy Infrastructure Eliot ChapelSimon Gladman

10:51am PDT

Storage Media Federation for Galaxy Eliot ChapelVahid Jalili

11:10am PDT

From laptop to super-computer: standardizing installation and management of Galaxy Eliot ChapelNuwan Goonesekera

11:30am PDT

Testing Wide-Area Lustre File Systems for Sharing load in Galaxy Eliot ChapelCarrie Ganote

11:50am PDT

Galaxy for AnswerALS on Microsoft Azure and Kubernetes Eliot ChapelRC Carter

11:56am PDT

Adding Python 3 support to Galaxy: a status report Eliot ChapelNicola Soranzo

12:02pm PDT

Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports Eliot ChapelMing Chen

1:40pm PDT

GCC Session 3: Challenges & Opportunities Eliot ChapelJeremy Goecks

1:41pm PDT

Galaksio, a more user friendly interface for Galaxy using workflows Eliot ChapelTomas Klingström

2:00pm PDT

Large scale analyses with improved dataset collections Eliot ChapelMarius van den Beek

2:20pm PDT

A fruitful year for the Galaxy Training materials Eliot ChapelBérénice Batut

2:40pm PDT

The usegalaxy.* servers: democratizing computational resources for life sciences at a new level Eliot ChapelSimon Gladman

3:00pm PDT

Posters & Demos: Odd Numbered PAB Atrium

3:01pm PDT

G01: Galaxy-E, a first stage towards collaborative data analysis by citizens PAB AtriumYvan Le Bras G03: Predicting Galaxy Tool Runtimes with Random Forests PAB AtriumAnastasia Tyryshkina G05: Galaksio, a more user friendly interface for Galaxy using workflows PAB AtriumTomas Klingström G09: EWAS-Galaxy: a tool suite for population epigenetics integrated into the Galaxy PAB AtriumKrzysztof Poterlowicz G11: Candidate Gene Methylation quantification (CandiMeth) Within the Galaxy Bioinformatics Interface PAB AtriumSara-Jayne Thursby G13: Bacterial genomics in Galaxy PAB AtriumDelphine Lariviere G15: Galaxy in a proteomics core facility PAB AtriumJeremy Volkening G17: Evaluation of moFF and FlashLFQ for label-free peptide quantification in proteomic workflows within the Galaxy-P framework PAB AtriumSubina Mehta G25: VKMZ: Visualizing Metabolomics on a van Krevelen Diagram through Galaxy PAB AtriumMark Esler G27: BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations PAB AtriumMatúš Kalas G29: ELIXIR contributions to the FAIRness of Bioinformatics resources, with bio.tools, Galaxy and CWL PAB AtriumKenzo-Hugo Hillion G31: A fruitful year for the Galaxy Training materials PAB AtriumBérénice Batut G33: Refinery: a data management, analysis, and visualization platform utilizing the Galaxy workbench PAB AtriumScott Ouellette

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm PDT

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams

5:40pm PDT

BoF: Sharing and Leveraging Galaxy Tool Execution Data TBAMartin Čech • Anastasia Tyryshkina

6:00pm PDT

BOSC & GCC Social Mixer | by Lifebit Woodstock NeighborhoodLifebit
 
Thursday, June 28
 

10:50am PDT

BOSC Session 6: Workflows Vollum Lecture HallKarsten Hokamp

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am PDT

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

12:02pm PDT

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features Eliot ChapelSveinung Gundersen

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz

1:40pm PDT

GCC Session 7: Community Update(s) Eliot ChapelFrederik Coppens

1:41pm PDT

Galaxy Community Update Eliot ChapelDaniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

5:00pm PDT

Conference Closing Vollum Lecture HallBjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko
 
Friday, June 29
 

9:00am PDT

GCC OBF CollaborationFest: Core Performing Arts BuildingBjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
 
Saturday, June 30
 

9:00am PDT

GCC OBF CollaborationFest: Core Performing Arts Building
 
Sunday, July 1
 

9:00am PDT

GCC OBF CollaborationFest: Encore Performing Arts Building
 
Monday, July 2
 

9:00am PDT

GCC OBF CollaborationFest: Encore Performing Arts Building
 

My Moderators Sessions

Thursday, June 28
 

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz