Loading…
GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Jonathan Sheffi

Jonathan Sheffi

Google Cloud
Sr Product Manager, Life Sciences
Cambridge, Massachusetts
Websitecloud.google.com/life-sciences
Tell me what Google Cloud should build or partner or do so that you would be more likely to use Google Cloud.
Tuesday, June 26
 

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:40am PDT

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

2:00pm PDT

Reproducible big data science: A case study in continuous FAIRness Vollum Lecture HallRavi K. Madduri

2:45pm PDT

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

3:01pm PDT

B09: Enabling Machine Learning at Scale with “Tiled” Human Genomes PAB AtriumSarah Wait Zaranek B31: The Arachne Graph Database Server PAB AtriumKyle Ellrott B43: CWLProv - Interoperable retrospective provenance capture and its challenges PAB AtriumFarah Zaib Khan B45: CWL Community Update PAB AtriumMichael R. Crusoe

8:00pm PDT

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden BoF: Snakemake get together Woodstock NeighborhoodJohannes Köster
 
Thursday, June 28
 

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:40am PDT

Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli Vollum Lecture HallMichael Heuer

9:45am PDT

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources Vollum Lecture HallHiromu Ochiai

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am PDT

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

1:50pm PDT

GSOC update Vollum Lecture HallMichael R. Crusoe

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

5:00pm PDT

Conference Closing Vollum Lecture HallBjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko

5:40pm PDT

BoF: GA4GH/DREAM group writing session PAB 332Brian O'Connor • James Eddy

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA