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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
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,
lodging
and
childcare
information
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,
BoFs
,
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,
#GCCBOSC
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KAUSHIK GHOSE
Seven Bridges Genomics
Workflow Development Tooling
Cambridge, MA
https://sevenbridges.com/
Rabix, Common Workflow Language
Tuesday
, June 26
9:00am PDT
Community built analyses that run everywhere with bcbio
PAB 332
Brad Chapman • Radhika S. Khetani • Lorena Pantano Rubino
WDL: the Workflow Description Language
Vollum Lounge
Geraldine Van der Auwera • Jeff Gentry • Chris Llanwarne
3:30pm PDT
Command line workflow management systems: Snakemake and Nextflow
Vollum Lounge
Johannes Köster • Paolo Di Tommaso
GATK4: What's new and how to run it
PAB 332
Geraldine Van der Auwera • Kate Noblett
6:20pm PDT
Birds-of-a-Feather (BoFs), With Your Dinner!
TBA
Wednesday
, June 27
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:51am PDT
Cloud-based data ingest for the Human Cell Atlas
Vollum Lecture Hall
Daniel Vaughan
11:05am PDT
The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data
Vollum Lecture Hall
Brian O'Connor
11:55am PDT
Variant Transforms: Loading VCF files into BigQuery for large scale data analysis
Vollum Lecture Hall
Asha Rostamianfar
12:30pm PDT
BoF: Let's talk about WDL
PAB 332
Geraldine Van der Auwera • Chris Llanwarne • Jeff Gentry
1:40pm PDT
BOSC Session 3: All About Data
Vollum Lecture Hall
Bastian Greshake Tzovaras
2:00pm PDT
Reproducible big data science: A case study in continuous FAIRness
Vollum Lecture Hall
Ravi K. Madduri
2:45pm PDT
NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data
Vollum Lecture Hall
David Siedzik
3:01pm PDT
B43: CWLProv - Interoperable retrospective provenance capture and its challenges
PAB Atrium
Farah Zaib Khan
Thursday
, June 28
9:20am PDT
The Funnel Task Execution Server
Vollum Lecture Hall
Alexander Buchanan
9:40am PDT
Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli
Vollum Lecture Hall
Michael Heuer
9:50am PDT
Plugging Docker-based visualizations into Django with django_docker_engine
Vollum Lecture Hall
Chuck McCallum
10:51am PDT
CWLProv - Interoperable retrospective provenance capture and its challenges
Vollum Lecture Hall
Farah Zaib Khan
11:10am PDT
Running portable workflow and container specifications at production scale in the cloud: strategy & best practices
Vollum Lecture Hall
Geet Duggal
11:30am PDT
The GA4GH/DREAM Workflow Execution Challenge
Vollum Lecture Hall
James Eddy
11:35am PDT
Bespin: An open source system to run reproducible computational workflows on cloud infrastructure
Vollum Lecture Hall
John Bradley
11:40am PDT
CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
Vollum Lecture Hall
Andrey Kartashov
11:45am PDT
Scaling bioinformatics analysis using Nextflow and AWS
Vollum Lecture Hall
Francesco Strozzi
11:50am PDT
One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio
Vollum Lecture Hall
Peter Amstutz
12:30pm PDT
BoF: Common Workflow Language community chat
PAB 332
John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz
3:01pm PDT
B12: Plugging Docker-based visualizations into Django with django_docker_engine
PAB Atrium
Chuck McCallum
D02: Adding R shiny apps as Galaxy interactive environment. A Galaxy-E demo
PAB Atrium
Valintin Chambon
Timezone
GCC BOSC 2018
America/Los Angeles
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Southeast Reed College Place, Portland, Oregon, United States
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Eliot Chapel
Gigantic Brewing
PAB 104
PAB 130
PAB 131
PAB 320
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PAB Atrium
Performing Arts Building
Reed College Campus
Reed Commons Cafe
Sitka Dorm, Ground Floor
TBA
Vollum Lecture Hall
Vollum Lounge
Woodstock Neighborhood
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