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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
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,
lodging
and
childcare
information
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,
BoFs
,
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,
#GCCBOSC
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← Back
Mr Keiran M Raine
Wellcome Sanger Institute
Principal Bioinformatician
Stevenage, United Kingdom
Docker, Dockstore, cwl, perl, python, javascript, react, JBrowse, NGS sequencing.
https://keiranmraine.github.io/
Tuesday
, June 26
8:00pm PDT
Joint BOSC & GCC: Opening Session
Vollum Lecture Hall
Nicole Vasilevsky • Heather Wiencko
8:10pm PDT
Opening Keynote: Tracy K. Teal--"Democratizing Data"
Vollum Lecture Hall
Tracy K. Teal
Wednesday
, June 27
9:00am PDT
Joint BOSC & GCC Session 1
Vollum Lecture Hall
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:00am PDT
The journey of a team of engineers in learning packaging technology
Vollum Lecture Hall
Patrick Durand • Valentin Marcon • Laure Quintric
10:50am PDT
BOSC: Session 2: Translational & Medical Informatics
Vollum Lecture Hall
Hilmar Lapp
10:51am PDT
Cloud-based data ingest for the Human Cell Atlas
Vollum Lecture Hall
Daniel Vaughan
11:05am PDT
The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data
Vollum Lecture Hall
Brian O'Connor
11:40am PDT
Enabling Machine Learning at Scale with “Tiled” Human Genomes
Vollum Lecture Hall
Sarah Wait Zaranek
11:55am PDT
Variant Transforms: Loading VCF files into BigQuery for large scale data analysis
Vollum Lecture Hall
Asha Rostamianfar
12:30pm PDT
BoF: JBrowse
PAB 104
Rob Buels
1:40pm PDT
BOSC Session 3: All About Data
Vollum Lecture Hall
Bastian Greshake Tzovaras
2:00pm PDT
Reproducible big data science: A case study in continuous FAIRness
Vollum Lecture Hall
Ravi K. Madduri
2:40pm PDT
GRADitude: A computational tool for the analysis of Grad-seq data
Vollum Lecture Hall
Silvia Di Giorgio
2:45pm PDT
NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data
Vollum Lecture Hall
David Siedzik
3:00pm PDT
Posters & Demos: Odd Numbered
PAB Atrium
3:01pm PDT
B35: Modernising somatic mutation calling pipelines with Open Source tools and Containers.
PAB Atrium
Mr Keiran M Raine
6:00pm PDT
BOSC & GCC Social Mixer | by Lifebit
Woodstock Neighborhood
Lifebit
8:00pm PDT
BoF: Nextflow Gathering
Sitka Dorm, Ground Floor
Evan Floden
Thursday
, June 28
9:20am PDT
The Funnel Task Execution Server
Vollum Lecture Hall
Alexander Buchanan
9:45am PDT
Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources
Vollum Lecture Hall
Hiromu Ochiai
9:55am PDT
The Arachne Graph Database Server
Vollum Lecture Hall
Kyle Ellrott
11:10am PDT
Running portable workflow and container specifications at production scale in the cloud: strategy & best practices
Vollum Lecture Hall
Geet Duggal
11:30am PDT
The GA4GH/DREAM Workflow Execution Challenge
Vollum Lecture Hall
James Eddy
11:35am PDT
Bespin: An open source system to run reproducible computational workflows on cloud infrastructure
Vollum Lecture Hall
John Bradley
11:40am PDT
CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
Vollum Lecture Hall
Andrey Kartashov
11:50am PDT
One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio
Vollum Lecture Hall
Peter Amstutz
12:30pm PDT
BoF: Common Workflow Language community chat
PAB 332
John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz
1:40pm PDT
BOSC Session 7: Project Updates and Late-Breaking Research
Vollum Lecture Hall
Chris Fields
7:00pm PDT
Conference Dinner Sponsored by Google Cloud
TBA
Friday
, June 29
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Bjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
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GCC BOSC 2018
America/Los Angeles
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Southeast Reed College Place, Portland, Oregon, United States
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Gigantic Brewing
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Reed College Campus
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Sitka Dorm, Ground Floor
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Vollum Lounge
Woodstock Neighborhood
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