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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Mr Keiran M Raine

Mr Keiran M Raine

Wellcome Sanger Institute
Principal Bioinformatician
Stevenage, United Kingdom
Docker, Dockstore, cwl, perl, python, javascript, react, JBrowse, NGS sequencing.
https://keiranmraine.github.io/
Tuesday, June 26
 

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:50am PDT

BOSC: Session 2: Translational & Medical Informatics Vollum Lecture HallHilmar Lapp

10:51am PDT

Cloud-based data ingest for the Human Cell Atlas Vollum Lecture HallDaniel Vaughan

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:40am PDT

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

12:30pm PDT

BoF: JBrowse PAB 104Rob Buels

1:40pm PDT

BOSC Session 3: All About Data Vollum Lecture HallBastian Greshake Tzovaras

2:00pm PDT

Reproducible big data science: A case study in continuous FAIRness Vollum Lecture HallRavi K. Madduri

2:40pm PDT

GRADitude: A computational tool for the analysis of Grad-seq data Vollum Lecture HallSilvia Di Giorgio

2:45pm PDT

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

3:00pm PDT

Posters & Demos: Odd Numbered PAB Atrium

3:01pm PDT

B35: Modernising somatic mutation calling pipelines with Open Source tools and Containers. PAB AtriumMr Keiran M Raine

6:00pm PDT

BOSC & GCC Social Mixer | by Lifebit Woodstock NeighborhoodLifebit

8:00pm PDT

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden
 
Thursday, June 28
 

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:45am PDT

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources Vollum Lecture HallHiromu Ochiai

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz

1:40pm PDT

BOSC Session 7: Project Updates and Late-Breaking Research Vollum Lecture HallChris Fields

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA
 
Friday, June 29
 

9:00am PDT

GCC OBF CollaborationFest: Core Performing Arts BuildingBjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman