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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Lawrence Heisler

Lawrence Heisler

Ontario Institute for Cancer Research
Manager, Bioinformatics Support
Toronto, Ontario, Canada
Websitehttps://genomics.oicr.on.ca/
Tuesday, June 26
 

9:00am PDT

Community built analyses that run everywhere with bcbio PAB 332Brad Chapman • Radhika S. Khetani • Lorena Pantano Rubino

12:30pm PDT

Setting up for success: Everything you need to know when planning for an RNA-seq analysis I PAB 104Radhika S. Khetani • Meeta Mistry • Mary Piper

3:30pm PDT

Setting up for success: Everything you need to know when planning for an RNA-seq analysis II PAB 104Radhika S. Khetani • Meeta Mistry • Mary Piper

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Break PAB Atrium

10:50am PDT

BOSC: Session 2: Translational & Medical Informatics Vollum Lecture HallHilmar Lapp

10:51am PDT

Cloud-based data ingest for the Human Cell Atlas Vollum Lecture HallDaniel Vaughan

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:20am PDT

Open Humans - connecting, sharing and analyzing personal data that enables community-driven research Vollum Lecture HallBastian Greshake Tzovaras

11:40am PDT

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:45am PDT

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results Vollum Lecture HallHervé Ménager

11:50am PDT

Building a community menagerie of automated variant validations Vollum Lecture HallBrad Chapman

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

12:00pm PDT

Q&A for lightning talks in this session ⚡ Vollum Lecture Hall

1:40pm PDT

BOSC Session 3: All About Data Vollum Lecture HallBastian Greshake Tzovaras

1:41pm PDT

miRTop: An open source community project for the development of a unified format file for miRNA data Vollum Lecture HallLorena Pantano Rubino

2:00pm PDT

Reproducible big data science: A case study in continuous FAIRness Vollum Lecture HallRavi K. Madduri

2:20pm PDT

InterMine 2.0: More than fifteen years of open biological data integration Vollum Lecture HallYo Yehudi

2:40pm PDT

GRADitude: A computational tool for the analysis of Grad-seq data Vollum Lecture HallSilvia Di Giorgio

2:45pm PDT

NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data Vollum Lecture HallDavid Siedzik

2:55pm PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm PDT

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
 
Thursday, June 28
 

9:00am PDT

BOSC Session 5: Developer Tools and Libraries Vollum Lecture HallPeter Cock

9:01am PDT

iMADS: A sustainable software collaboration for predicting transcription factor binding specificity Vollum Lecture HallDan Leehr

9:20am PDT

The Funnel Task Execution Server Vollum Lecture HallAlexander Buchanan

9:40am PDT

Distributed execution of bioinformatics tools on Apache Spark with ADAM and Cannoli Vollum Lecture HallMichael Heuer

9:45am PDT

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources Vollum Lecture HallHiromu Ochiai

9:50am PDT

Plugging Docker-based visualizations into Django with django_docker_engine Vollum Lecture HallChuck McCallum

9:55am PDT

The Arachne Graph Database Server Vollum Lecture HallKyle Ellrott

10:00am PDT

Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native Vollum Lecture HallHilmar Lapp

10:05am PDT

taxa: taxonomic data standards and methods for R and Python Vollum Lecture HallScott Chamberlain

10:10am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

10:50am PDT

BOSC Session 6: Workflows Vollum Lecture HallKarsten Hokamp

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan

11:10am PDT

Running portable workflow and container specifications at production scale in the cloud: strategy & best practices Vollum Lecture HallGeet Duggal

11:30am PDT

The GA4GH/DREAM Workflow Execution Challenge Vollum Lecture HallJames Eddy

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

11:45am PDT

Scaling bioinformatics analysis using Nextflow and AWS Vollum Lecture HallFrancesco Strozzi

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

11:55am PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

12:10pm PDT

Lunch PAB Atrium

1:40pm PDT

BOSC Session 7: Project Updates and Late-Breaking Research Vollum Lecture HallChris Fields

1:41pm PDT

OBF update Vollum Lecture HallHilmar Lapp

1:50pm PDT

GSOC update Vollum Lecture HallMichael R. Crusoe

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

2:07pm PDT

Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow Vollum Lecture HallNathan Dunn

2:27pm PDT

Late-Breaking Lightning Talks ⚡ Vollum Lecture Hall

2:52pm PDT

Q&A for lightning talks in this session⚡ Vollum Lecture Hall

4:00pm PDT

Session 8 - Joint BOSC & GCC Closing Vollum Lecture HallPratik Jagtap

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA