Loading…
GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

Sign up or log in to bookmark your favorites and sync them to your phone or calendar.

B.b Conference - BOSC [clear filter]
Wednesday, June 27
 

11:40am

Enabling Machine Learning at Scale with “Tiled” Human Genomes
Video​​​

Speakers
avatar for Sarah Wait Zaranek

Sarah Wait Zaranek

President, Curoverse Research
Interested in large data, WGS, machine learning, open source standards.



Wednesday June 27, 2018 11:40am - 11:45am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:45am

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results

Speakers
avatar for Hervé Ménager

Hervé Ménager

Research Engineer, Institut Pasteur
Bioinformatics and Biostatistics Hub of the C3BI, Institut Pasteur



Wednesday June 27, 2018 11:45am - 11:50am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:50am

Building a community menagerie of automated variant validations
Video​​​

Speakers
avatar for Brad Chapman

Brad Chapman

Bioinformatics Core, Harvard Chan School
Brad is a senior research scientist in the Bioinformatics Core at Harvard T.H. Chan School of Public Health. He develops open source community built infrastructure for analyzing biological data, focusing on multi platform interoperability and automated validation against heterogeneous... Read More →



Wednesday June 27, 2018 11:50am - 11:55am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:55am

12:00pm

Q&A for lightning talks in this session ⚡
Got questions for this session's lightning talk speakers?  Ask them now.

Wednesday June 27, 2018 12:00pm - 12:08pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:40pm

GRADitude: A computational tool for the analysis of Grad-seq data
Video​​​

Speakers
SD

Silvia Di Giorgio

PhD-student, University of Würzburg



Wednesday June 27, 2018 2:40pm - 2:45pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:45pm

2:50pm

Reproducible data analysis with Snakemake
Video​​​

Speakers
JK

Johannes Köster

Genome Informatics, Institute of Human Genetics, University of Duisburg-EssenDepartment of Medical Oncology, Harvard Medical Schoolhttps://koesterlab.github.io



Wednesday June 27, 2018 2:50pm - 2:55pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:55pm

Q&A for lightning talks in this session⚡
Got questions for this session's lightning talk speakers?  Ask them now.

Wednesday June 27, 2018 2:55pm - 2:59pm
Vollum Lecture Hall Vollum College Center, Reed Campus
 
Thursday, June 28
 

9:40am

9:45am

Extended Extraction Transform Load: A novel framework for batch jobs on cloud computing resources
Video​​​

Speakers
avatar for Hiromu Ochiai

Hiromu Ochiai

Researcher, National Cancer Center Japan
https://github.com/otiai10



Thursday June 28, 2018 9:45am - 9:50am
Vollum Lecture Hall Vollum College Center, Reed Campus

9:50am

9:55am

The Arachne Graph Database Server
Video​​​

Speakers

Thursday June 28, 2018 9:55am - 10:00am
Vollum Lecture Hall Vollum College Center, Reed Campus

10:00am

Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native
Video​​​

Speakers
avatar for Hilmar Lapp

Hilmar Lapp

Director of Informatics, Duke University, Center for Gemonic and Computational Biology



Thursday June 28, 2018 10:00am - 10:05am
Vollum Lecture Hall Vollum College Center, Reed Campus

10:05am

taxa: taxonomic data standards and methods for R and Python
Video​​​


Thursday June 28, 2018 10:05am - 10:10am
Vollum Lecture Hall Vollum College Center, Reed Campus

10:10am

Q&A for lightning talks in this session⚡
Got questions for this session's lightning talk speakers?  Ask them now.

Thursday June 28, 2018 10:10am - 10:20am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:30am

The GA4GH/DREAM Workflow Execution Challenge
Video​​​

Speakers
avatar for James Eddy

James Eddy

Senior Scientist, Sage Bionetworks
I'm a data scientist, systems biologist, and an advocate for reproducible, open source, open access science and software. In collaboration with colleagues at Sage Bionetworks and across genomics and health research networks, I'm focused on developing infrastructure, standards, and... Read More →



Thursday June 28, 2018 11:30am - 11:35am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:35am

11:40am

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform
Video​​​

Speakers
avatar for Andrey Kartashov

Andrey Kartashov

Senior Software Developer, Cincinnati Childrens Hospital
I am a scientific programmer who performed data analysis in areas ranging from space science to physical chemistry and now for functional genomics. I am the developer behind BioWardrobe, an integrated platform for analysis of epigenomics and transcriptomics data that helps researchers... Read More →



Thursday June 28, 2018 11:40am - 11:45am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:45am

Scaling bioinformatics analysis using Nextflow and AWS
Video​​​



Thursday June 28, 2018 11:45am - 11:50am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:50am

11:55am

Q&A for lightning talks in this session⚡
Got questions for this session's lightning talk speakers?  Ask them now.

Thursday June 28, 2018 11:55am - 12:05pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:27pm

Late-Breaking Lightning Talks ⚡
  • CWL Community Update: Michael R. Crusoe (video)
  • Code is Science: a manifesto for open source code in science: Yo Yehudi (video)
  • FAIRsharing: Working with the community to map the landscape of standards, databases and data policies: Massimiliano Izzo (video)
  • Scalable computing in Bioconductor: from cores to clusters: Nitesh Turaga (video)
  • BioThings Hub: An API Gateway for Biomedical Knowledge: Sébastien Lelong (video)
  • Bioinformatics in the age of AI and personalized medicine: an open source example: Michael Duncan (video)


Thursday June 28, 2018 2:27pm - 2:52pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:52pm

Q&A for lightning talks in this session⚡
Got questions for this session's lightning talk speakers?  Ask them now.

Thursday June 28, 2018 2:52pm - 3:00pm
Vollum Lecture Hall Vollum College Center, Reed Campus