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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

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B.b Conference - BOSC [clear filter]
Wednesday, June 27
 

10:51am

Cloud-based data ingest for the Human Cell Atlas
Video​​​

Speakers
avatar for Daniel Vaughan

Daniel Vaughan

Tech Lead, EMBL-EBI



Wednesday June 27, 2018 10:51am - 11:05am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:05am

11:20am

1:41pm

miRTop: An open source community project for the development of a unified format file for miRNA data

Speakers
avatar for Lorena Pantano Rubino

Lorena Pantano Rubino

Research Scientist, Harvard Chan School
I work with small RNAs, mainly detected through sequencing technology. I like visualization and multi-omic integration methods. :)



Wednesday June 27, 2018 1:41pm - 2:00pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:00pm

2:20pm

InterMine 2.0: More than fifteen years of open biological data integration
Video​​​

Speakers
avatar for Yo Yehudi

Yo Yehudi

Software Developer, InterMine (University of Cambridge)
Integrated genomic data (InterMine)



Wednesday June 27, 2018 2:20pm - 2:40pm
Vollum Lecture Hall Vollum College Center, Reed Campus
 
Thursday, June 28
 

9:01am

9:20am

The Funnel Task Execution Server
Video​​​



Thursday June 28, 2018 9:20am - 9:40am
Vollum Lecture Hall Vollum College Center, Reed Campus

10:51am

CWLProv - Interoperable retrospective provenance capture and its challenges
Video​​​

Speakers
avatar for Farah Zaib Khan

Farah Zaib Khan

The University of Melbourne
Bioinformatics Workflow developer CWL enthusiastWorking on Provenance of bioinformatics workflows


Thursday June 28, 2018 10:51am - 11:10am
Vollum Lecture Hall Vollum College Center, Reed Campus

11:10am

1:41pm

OBF update
Video​​​

Speakers
avatar for Hilmar Lapp

Hilmar Lapp

Director of Informatics, Duke University, Center for Gemonic and Computational Biology


Thursday June 28, 2018 1:41pm - 1:50pm
Vollum Lecture Hall Vollum College Center, Reed Campus

1:50pm

GSOC update
Video​​​

Speakers
avatar for Michael R. Crusoe

Michael R. Crusoe

Project Lead & Co-founder, Common Workflow Language project
Michael R. Crusoe is one of the co-founders of the CWL project and is the CWL Project Lead. His facilitation, technical contributions, and training on behalf of the project draw from his time as the former lead developer of C. Titus Brown's k-h-mer project, his previous career as... Read More →



Thursday June 28, 2018 1:50pm - 2:00pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:00pm

Biopython Project Update 2018

Speakers
avatar for Peter Cock

Peter Cock

The James Hutton Institute
Bioinformatician at the James Hutton Institute, a member of the BOSC organizing committee, treasurer of the Open Bioinformatics Foundation, and a core developer on the Biopython project.



Thursday June 28, 2018 2:00pm - 2:07pm
Vollum Lecture Hall Vollum College Center, Reed Campus

2:07pm

Community Annotation with Apollo: Engaging the Collective in a Genome Annotation Workflow
Video​​​

Speakers
avatar for Nathan Dunn

Nathan Dunn

Software Developer, UC Berkeley
I work on the Apollo project, but also have worked on various other projects such as the Monarch Initiative, the (cross-species ontology relations between phenotypes and genomics), the Alliance of Genome resources (major mods curating data), the Gene Ontology, and the Xena Variant... Read More →



Thursday June 28, 2018 2:07pm - 2:27pm
Vollum Lecture Hall Vollum College Center, Reed Campus