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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
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,
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and
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← Back
Matúš Kalas
University of Bergen
Senior Engineer
Norway
https://orcid.org/0000-0002-1509-4981
Attending GCC2022 virtually 🌌
Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...
Tuesday
, June 26
3:30pm PDT
Command line workflow management systems: Snakemake and Nextflow
Vollum Lounge
Johannes Köster • Paolo Di Tommaso
8:00pm PDT
Joint BOSC & GCC: Opening Session
Vollum Lecture Hall
Nicole Vasilevsky • Heather Wiencko
Opening & Welcome
Vollum Lecture Hall
Dave Clements • Nomi Harris
8:10pm PDT
Opening Keynote: Tracy K. Teal--"Democratizing Data"
Vollum Lecture Hall
Tracy K. Teal
Wednesday
, June 27
9:00am PDT
Joint BOSC & GCC Session 1
Vollum Lecture Hall
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:00am PDT
The journey of a team of engineers in learning packaging technology
Vollum Lecture Hall
Patrick Durand • Valentin Marcon • Laure Quintric
10:50am PDT
BOSC: Session 2: Translational & Medical Informatics
Vollum Lecture Hall
Hilmar Lapp
11:20am PDT
Open Humans - connecting, sharing and analyzing personal data that enables community-driven research
Vollum Lecture Hall
Bastian Greshake Tzovaras
11:45am PDT
JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results
Vollum Lecture Hall
Hervé Ménager
11:55am PDT
Variant Transforms: Loading VCF files into BigQuery for large scale data analysis
Vollum Lecture Hall
Asha Rostamianfar
12:10pm PDT
Lunch, sponsored by Lenovo + Intel
PAB Atrium
12:30pm PDT
BoF: Getting contributors to your open project
PAB 130
Yo Yehudi
BoF: JBrowse
PAB 104
Rob Buels
BoF: Stable and persistent URIs in biological data integration systems
PAB 131
Daniela Butano
1:41pm PDT
miRTop: An open source community project for the development of a unified format file for miRNA data
Vollum Lecture Hall
Lorena Pantano Rubino
Galaksio, a more user friendly interface for Galaxy using workflows
Eliot Chapel
Tomas Klingström
2:20pm PDT
InterMine 2.0: More than fifteen years of open biological data integration
Vollum Lecture Hall
Yo Yehudi
2:40pm PDT
The usegalaxy.* servers: democratizing computational resources for life sciences at a new level
Eliot Chapel
Simon Gladman
3:00pm PDT
Posters & Demos: Odd Numbered
PAB Atrium
3:01pm PDT
G27: BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations
PAB Atrium
Matúš Kalas
4:00pm PDT
Session 4 - Joint BOSC & GCC
Vollum Lecture Hall
Brad Chapman
4:01pm PDT
Improving the Bioinformatics Curriculum
Vollum Lecture Hall
Jason Williams
4:20pm PDT
Panel: Training and Documentation in Bioinformatics
Vollum Lecture Hall
Brad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
5:40pm PDT
BoF: Educating Funders/PIs on Open Science
TBA
Tracy K. Teal • Jason Williams
BoF: Open Bioinformatics Foundation Community (OBF)
Reed Commons Cafe
Yo Yehudi
6:00pm PDT
BOSC & GCC Social Mixer | by Lifebit
Woodstock Neighborhood
Lifebit
Thursday
, June 28
9:01am PDT
Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree
Eliot Chapel
Nic Herndon
10:00am PDT
Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native
Vollum Lecture Hall
Hilmar Lapp
10:05am PDT
taxa: taxonomic data standards and methods for R and Python
Vollum Lecture Hall
Scott Chamberlain
10:51am PDT
CWLProv - Interoperable retrospective provenance capture and its challenges
Vollum Lecture Hall
Farah Zaib Khan
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes
Eliot Chapel
Caleb Easterly • Pratik Jagtap
11:50am PDT
One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio
Vollum Lecture Hall
Peter Amstutz
12:30pm PDT
BoF: Common Workflow Language community chat
PAB 332
John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz
1:41pm PDT
OBF update
Vollum Lecture Hall
Hilmar Lapp
1:50pm PDT
GSOC update
Vollum Lecture Hall
Michael R. Crusoe
2:00pm PDT
Biopython Project Update 2018
Vollum Lecture Hall
Peter Cock
2:27pm PDT
Late-Breaking Lightning Talks ⚡
Vollum Lecture Hall
2:46pm PDT
Galaxy-E, a first step towards collaborative data analysis by citizens
Eliot Chapel
Yvan Le Bras
3:00pm PDT
Posters & Demos: Even Numbered
PAB Atrium
3:01pm PDT
G28: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2018 update)
PAB Atrium
Hervé Ménager
4:01pm PDT
Closing Keynote: Confound it! Reproducible biology from "omics" data analysis
Vollum Lecture Hall
Lucia Peixoto
5:00pm PDT
Conference Closing
Vollum Lecture Hall
Bjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko
7:00pm PDT
Conference Dinner Sponsored by Google Cloud
TBA
Friday
, June 29
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Bjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
Saturday
, June 30
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Sunday
, July 1
9:00am PDT
GCC OBF CollaborationFest: Encore
Performing Arts Building
Monday
, July 2
9:00am PDT
GCC OBF CollaborationFest: Encore
Performing Arts Building
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GCC BOSC 2018
America/Los Angeles
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Reed College Campus
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