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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Matúš Kalas

Matúš Kalas

University of Bergen
Senior Engineer
Norway
Websitehttps://orcid.org/0000-0002-1509-4981
Attending GCC2022 virtually 🌌

Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...
Tuesday, June 26
 

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:50am PDT

BOSC: Session 2: Translational & Medical Informatics Vollum Lecture HallHilmar Lapp

11:20am PDT

Open Humans - connecting, sharing and analyzing personal data that enables community-driven research Vollum Lecture HallBastian Greshake Tzovaras

11:45am PDT

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results Vollum Lecture HallHervé Ménager

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

12:10pm PDT

Lunch, sponsored by Lenovo + Intel PAB Atrium

12:30pm PDT

BoF: Getting contributors to your open project PAB 130Yo Yehudi BoF: JBrowse PAB 104Rob Buels BoF: Stable and persistent URIs in biological data integration systems PAB 131Daniela Butano

1:41pm PDT

miRTop: An open source community project for the development of a unified format file for miRNA data Vollum Lecture HallLorena Pantano Rubino Galaksio, a more user friendly interface for Galaxy using workflows Eliot ChapelTomas Klingström

2:20pm PDT

InterMine 2.0: More than fifteen years of open biological data integration Vollum Lecture HallYo Yehudi

2:40pm PDT

The usegalaxy.* servers: democratizing computational resources for life sciences at a new level Eliot ChapelSimon Gladman

3:00pm PDT

Posters & Demos: Odd Numbered PAB Atrium

3:01pm PDT

G27: BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations PAB AtriumMatúš Kalas

4:00pm PDT

Session 4 - Joint BOSC & GCC Vollum Lecture HallBrad Chapman

4:01pm PDT

Improving the Bioinformatics Curriculum Vollum Lecture HallJason Williams

4:20pm PDT

Panel: Training and Documentation in Bioinformatics Vollum Lecture HallBrad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams

5:40pm PDT

BoF: Educating Funders/PIs on Open Science TBATracy K. Teal • Jason Williams BoF: Open Bioinformatics Foundation Community (OBF) Reed Commons CafeYo Yehudi

6:00pm PDT

BOSC & GCC Social Mixer | by Lifebit Woodstock NeighborhoodLifebit
 
Thursday, June 28
 

9:01am PDT

Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree Eliot ChapelNic Herndon

10:00am PDT

Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native Vollum Lecture HallHilmar Lapp

10:05am PDT

taxa: taxonomic data standards and methods for R and Python Vollum Lecture HallScott Chamberlain

10:51am PDT

CWLProv - Interoperable retrospective provenance capture and its challenges Vollum Lecture HallFarah Zaib Khan Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes Eliot ChapelCaleb Easterly • Pratik Jagtap

11:50am PDT

One Week to 1,000 Whole Genomes with Open Source: Arvados, CWL, and bcbio Vollum Lecture HallPeter Amstutz

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz

1:41pm PDT

OBF update Vollum Lecture HallHilmar Lapp

1:50pm PDT

GSOC update Vollum Lecture HallMichael R. Crusoe

2:00pm PDT

Biopython Project Update 2018 Vollum Lecture HallPeter Cock

2:27pm PDT

Late-Breaking Lightning Talks ⚡ Vollum Lecture Hall

2:46pm PDT

Galaxy-E, a first step towards collaborative data analysis by citizens Eliot ChapelYvan Le Bras

3:00pm PDT

Posters & Demos: Even Numbered PAB Atrium

3:01pm PDT

G28: EDAM: the ontology of bioinformatics operations, types of data, topics, and data formats (2018 update) PAB AtriumHervé Ménager

4:01pm PDT

Closing Keynote: Confound it! Reproducible biology from "omics" data analysis Vollum Lecture HallLucia Peixoto

5:00pm PDT

Conference Closing Vollum Lecture HallBjorn Gruning • Nomi Harris • Nicole Vasilevsky • Heather Wiencko

7:00pm PDT

Conference Dinner Sponsored by Google Cloud TBA
 
Friday, June 29
 

9:00am PDT

GCC OBF CollaborationFest: Core Performing Arts BuildingBjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
 
Saturday, June 30
 

9:00am PDT

GCC OBF CollaborationFest: Core Performing Arts Building
 
Sunday, July 1
 

9:00am PDT

GCC OBF CollaborationFest: Encore Performing Arts Building
 
Monday, July 2
 

9:00am PDT

GCC OBF CollaborationFest: Encore Performing Arts Building