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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Oleksandr Moskalenko

Oleksandr Moskalenko

University of Florida
RCF
USA, FL, Gainesville
Websitehttps://rc.ufl.edu
User services (including Galaxy), apps and support lead at UF Research Computing, long-term Galaxy admin, RSE (Research Software Engineer), and a research computing enthusiast in general.
Sunday, June 24
 

3:00pm PDT

Conference desk open PAB Atrium
 
Monday, June 25
 

9:00am PDT

Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Intro to Galaxy Administration 2 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

3:30pm PDT

Intro to Galaxy Administration 3 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
 
Tuesday, June 26
 

9:00am PDT

Conda and Containers PAB 320John Chilton • Bjorn Gruning • Martin Čech

12:30pm PDT

Galaxy Interactive Environments PAB 332Bjorn Gruning Introduction to Common Workflow Language PAB 320Michael R. Crusoe • Kenzo-Hugo Hillion • Hervé Ménager Practical use of the Galaxy API command line tools Vollum LoungeDannon Baker • Marius van den Beek • Nicola Soranzo

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso Galaxy Architecture PAB 320John Chilton • Nate Coraor

6:20pm PDT

BoF: Galaxy for proteomics interest group Reed Commons CafeTimothy J. Griffin • Pratik Jagtap

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko Opening & Welcome Vollum Lecture HallDave Clements • Nomi Harris

8:10pm PDT

Opening Keynote: Tracy K. Teal--"Democratizing Data" Vollum Lecture HallTracy K. Teal
 
Wednesday, June 27
 

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Break PAB Atrium

3:01pm PDT

G23: SECIMTools: A suite of Metabolomics Data Analysis Tools PAB AtriumOleksandr Moskalenko

6:00pm PDT

BOSC & GCC Social Mixer | by Lifebit Woodstock NeighborhoodLifebit

8:00pm PDT

BoF: Nextflow Gathering Sitka Dorm, Ground FloorEvan Floden
 
Thursday, June 28
 

9:00am PDT

GCC Session 5: Galaxy in situ Eliot ChapelLaure Quintric

10:50am PDT

GCC Session 6: Galaxy in situ Eliot ChapelMaria Doyle

10:51am PDT

Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes Eliot ChapelCaleb Easterly • Pratik Jagtap

11:10am PDT

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline Eliot ChapelNicola Soranzo

11:35am PDT

Bespin: An open source system to run reproducible computational workflows on cloud infrastructure Vollum Lecture HallJohn Bradley

11:40am PDT

CWL-Airflow pipeline manager as a backend for BioWardrobe data analysis platform Vollum Lecture HallAndrey Kartashov

12:30pm PDT

BoF: Common Workflow Language community chat PAB 332John Chilton • Michael R. Crusoe • Hervé Ménager • Jeff Gentry • Peter Amstutz BoF: Standardizing Galaxy deployments PAB 104The Other Enis Afgan • Nuwan Goonesekera

1:40pm PDT

GCC Session 7: Community Update(s) Eliot ChapelFrederik Coppens