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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
Registration
,
lodging
and
childcare
information
Sponsorships
,
BoFs
,
Frequently Asked Questions (FAQ)
,
#GCCBOSC
/
Chat
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Frederic Sapet
Biogemma
Bioinformatics Research Engineer
Clermont-Ferrand Area, France
biogemma.com
Monday
, June 25
9:00am PDT
Intro to Galaxy Administration 1
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
11:30am PDT
Lunch
Reed Commons Cafe
12:30pm PDT
Intro to Galaxy Administration 2
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
3:00pm PDT
Break
Reed Commons Cafe
3:30pm PDT
Intro to Galaxy Administration 3
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
6:00pm PDT
Dinner on your own
TBA
Tuesday
, June 26
9:00am PDT
Conda and Containers
PAB 320
John Chilton • Bjorn Gruning • Martin Čech
11:30am PDT
Lunch
Reed Commons Cafe
12:30pm PDT
Galaxy Interactive Environments
PAB 332
Bjorn Gruning
3:00pm PDT
Break
PAB Atrium
3:30pm PDT
Galaxy Architecture
PAB 320
John Chilton • Nate Coraor
Wednesday
, June 27
9:00am PDT
Joint BOSC & GCC Session 1
Vollum Lecture Hall
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:00am PDT
The journey of a team of engineers in learning packaging technology
Vollum Lecture Hall
Patrick Durand • Valentin Marcon • Laure Quintric
10:20am PDT
Break
PAB Atrium
10:50am PDT
GCC Session 2: Galaxy Infrastructure
Eliot Chapel
Simon Gladman
10:51am PDT
Storage Media Federation for Galaxy
Eliot Chapel
Vahid Jalili
11:10am PDT
From laptop to super-computer: standardizing installation and management of Galaxy
Eliot Chapel
Nuwan Goonesekera
11:56am PDT
Adding Python 3 support to Galaxy: a status report
Eliot Chapel
Nicola Soranzo
12:10pm PDT
Lunch, sponsored by Lenovo + Intel
PAB Atrium
12:30pm PDT
BoF: JBrowse
PAB 104
Rob Buels
1:40pm PDT
GCC Session 3: Challenges & Opportunities
Eliot Chapel
Jeremy Goecks
1:41pm PDT
Galaksio, a more user friendly interface for Galaxy using workflows
Eliot Chapel
Tomas Klingström
2:00pm PDT
Large scale analyses with improved dataset collections
Eliot Chapel
Marius van den Beek
2:20pm PDT
A fruitful year for the Galaxy Training materials
Eliot Chapel
Bérénice Batut
2:40pm PDT
The usegalaxy.* servers: democratizing computational resources for life sciences at a new level
Eliot Chapel
Simon Gladman
3:00pm PDT
Posters & Demos: Odd Numbered
PAB Atrium
5:40pm PDT
BoF: Using Galaxy in bioinformatics support infrastructures
Reed Commons Cafe
Tomas Klingström
Thursday
, June 28
9:00am PDT
GCC Session 5: Galaxy in situ
Eliot Chapel
Laure Quintric
9:01am PDT
Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree
Eliot Chapel
Nic Herndon
9:20am PDT
G-OnRamp: Create UCSC Assembly Hubs and JBrowse/Apollo Archives for Collaborative Eukaryotic Genome Annotations
Eliot Chapel
Luke Sargent
9:40am PDT
Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA)
Eliot Chapel
Thomas Matthews
10:00am PDT
Galaxy in a proteomics core facility
Eliot Chapel
Jeremy Volkening
10:20am PDT
Break
PAB Atrium
10:50am PDT
GCC Session 6: Galaxy in situ
Eliot Chapel
Maria Doyle
12:10pm PDT
Lunch
PAB Atrium
12:30pm PDT
BoF: Standardizing Galaxy deployments
PAB 104
The Other Enis Afgan • Nuwan Goonesekera
1:40pm PDT
GCC Session 7: Community Update(s)
Eliot Chapel
Frederik Coppens
1:41pm PDT
Galaxy Community Update
Eliot Chapel
Daniel Blankenberg • Jeremy Goecks • Anton Nekrutenko • James Taylor
3:00pm PDT
Posters & Demos: Even Numbered
PAB Atrium
4:00pm PDT
Session 8 - Joint BOSC & GCC Closing
Vollum Lecture Hall
Pratik Jagtap
7:00pm PDT
Conference Dinner Sponsored by Google Cloud
TBA
Friday
, June 29
9:00am PDT
GCC OBF CollaborationFest: Core
Performing Arts Building
Bjorn Gruning • Dannon Baker • Jennifer Hillman-Jackson • Frederik Coppens • Brad Chapman
Timezone
GCC BOSC 2018
America/Los Angeles
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Southeast Reed College Place, Portland, Oregon, United States
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