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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There will be
two days of training
, a
two+ day meeting
, and
four days of intense collaboration
. The meeting features
joint & parallel sessions
,
shared keynotes
,
poster & demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Videos:
BOSC
,
GCC
; and
Program PDF
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,
lodging
and
childcare
information
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,
BoFs
,
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,
#GCCBOSC
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Thomas Matthews
Public Health Agency of Canada
Monday
, June 25
9:00am PDT
Intro to Galaxy Administration 1
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
11:30am PDT
Lunch
Reed Commons Cafe
12:30pm PDT
Intro to Galaxy Administration 2
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
3:00pm PDT
Break
Reed Commons Cafe
3:30pm PDT
Intro to Galaxy Administration 3
PAB 320
The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech
Tuesday
, June 26
9:00am PDT
WDL: the Workflow Description Language
Vollum Lounge
Geraldine Van der Auwera • Jeff Gentry • Chris Llanwarne
11:30am PDT
Lunch
Reed Commons Cafe
12:30pm PDT
Introduction to Common Workflow Language
PAB 320
Michael R. Crusoe • Kenzo-Hugo Hillion • Hervé Ménager
3:30pm PDT
Galaxy Architecture
PAB 320
John Chilton • Nate Coraor
8:00pm PDT
Opening & Welcome
Vollum Lecture Hall
Dave Clements • Nomi Harris
8:10pm PDT
Opening Keynote: Tracy K. Teal--"Democratizing Data"
Vollum Lecture Hall
Tracy K. Teal
Wednesday
, June 27
9:01am PDT
Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter"
Vollum Lecture Hall
Fernando Pérez
10:00am PDT
The journey of a team of engineers in learning packaging technology
Vollum Lecture Hall
Patrick Durand • Valentin Marcon • Laure Quintric
10:51am PDT
Storage Media Federation for Galaxy
Eliot Chapel
Vahid Jalili
11:20am PDT
Open Humans - connecting, sharing and analyzing personal data that enables community-driven research
Vollum Lecture Hall
Bastian Greshake Tzovaras
11:50am PDT
Galaxy for AnswerALS on Microsoft Azure and Kubernetes
Eliot Chapel
RC Carter
11:56am PDT
Adding Python 3 support to Galaxy: a status report
Eliot Chapel
Nicola Soranzo
12:02pm PDT
Aurora Galaxy Tools: Using R Markdown as a framework to build interactive Galaxy tool output reports
Eliot Chapel
Ming Chen
1:41pm PDT
Galaksio, a more user friendly interface for Galaxy using workflows
Eliot Chapel
Tomas Klingström
2:00pm PDT
Reproducible big data science: A case study in continuous FAIRness
Vollum Lecture Hall
Ravi K. Madduri
2:20pm PDT
InterMine 2.0: More than fifteen years of open biological data integration
Vollum Lecture Hall
Yo Yehudi
2:40pm PDT
The usegalaxy.* servers: democratizing computational resources for life sciences at a new level
Eliot Chapel
Simon Gladman
2:45pm PDT
NIH Data Commons Pilot Phase leverages the cloud to access, analyze, and share FAIR biomedical data
Vollum Lecture Hall
David Siedzik
2:50pm PDT
Reproducible data analysis with Snakemake
Vollum Lecture Hall
Johannes Köster
4:20pm PDT
Panel: Training and Documentation in Bioinformatics
Vollum Lecture Hall
Brad Chapman • Bérénice Batut • Fernando Pérez • Tracy K. Teal • Jason Williams
Thursday
, June 28
9:01am PDT
Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree
Eliot Chapel
Nic Herndon
9:20am PDT
G-OnRamp: Create UCSC Assembly Hubs and JBrowse/Apollo Archives for Collaborative Eukaryotic Genome Annotations
Eliot Chapel
Luke Sargent
9:40am PDT
Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA)
Eliot Chapel
Thomas Matthews
10:00am PDT
Owlery: An easily deployable web service for making reasoning queries over OWL ontologies web-native
Vollum Lecture Hall
Hilmar Lapp
Galaxy in a proteomics core facility
Eliot Chapel
Jeremy Volkening
10:51am PDT
CWLProv - Interoperable retrospective provenance capture and its challenges
Vollum Lecture Hall
Farah Zaib Khan
11:10am PDT
Running portable workflow and container specifications at production scale in the cloud: strategy & best practices
Vollum Lecture Hall
Geet Duggal
11:35am PDT
Bespin: An open source system to run reproducible computational workflows on cloud infrastructure
Vollum Lecture Hall
John Bradley
11:56am PDT
ImmPort Galaxy, facilitating analysis and meta-analysis of flow cytometry data
Eliot Chapel
Cristel Thomas
3:01pm PDT
G12: Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA)
PAB Atrium
Thomas Matthews
4:01pm PDT
Closing Keynote: Confound it! Reproducible biology from "omics" data analysis
Vollum Lecture Hall
Lucia Peixoto
7:00pm PDT
Conference Dinner Sponsored by Google Cloud
TBA
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GCC BOSC 2018
America/Los Angeles
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Southeast Reed College Place, Portland, Oregon, United States
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