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GCC BOSC 2018 has ended
The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018.  There will be two days of training, a two+ day meeting, and four days of intense collaboration.  The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events.  GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

avatar for Tim Thompson

Tim Thompson

xDBio, Inc
CTO
Whitefish, MT
Websitexdbio.com
New to the start-up world, myself and my partner have created a business focused on making Bioinformatics easier to use for programmers new to the field, as well as researchers new(ish) to programming
Monday, June 25
 

8:00am PDT

Conference desk open PAB Atrium

9:00am PDT

Intro to Galaxy Administration 1 PAB 320The Other Enis Afgan • Marius van den Beek • John Chilton • Nate Coraor • Carrie Ganote • Simon Gladman • Nuwan Goonesekera • Martin Čech

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

RNA-Seq Analysis with Galaxy PAB 104Anton Nekrutenko

3:30pm PDT

Galaxy For Proteogenomics ! PAB 104Timothy J. Griffin • Pratik Jagtap • James Johnson • Praveen Kumar • Subina Mehta

7:30pm PDT

Bioinformatics Training and Education with the Galaxy Training Network PAB 320Bérénice Batut
 
Tuesday, June 26
 

8:00am PDT

Conference desk open PAB Atrium

9:00am PDT

Community built analyses that run everywhere with bcbio PAB 332Brad Chapman • Radhika S. Khetani • Lorena Pantano Rubino

11:30am PDT

Lunch Reed Commons Cafe

12:30pm PDT

Setting up for success: Everything you need to know when planning for an RNA-seq analysis I PAB 104Radhika S. Khetani • Meeta Mistry • Mary Piper

3:30pm PDT

Command line workflow management systems: Snakemake and Nextflow Vollum LoungeJohannes Köster • Paolo Di Tommaso

8:00pm PDT

Joint BOSC & GCC: Opening Session Vollum Lecture HallNicole Vasilevsky • Heather Wiencko
 
Wednesday, June 27
 

8:00am PDT

Conference desk open PAB Atrium

9:00am PDT

Joint BOSC & GCC Session 1 Vollum Lecture Hall

9:01am PDT

Keynote: Fernando Pérez--"Sustainable development of scientific open source tools: a view from Jupyter" Vollum Lecture HallFernando Pérez

10:00am PDT

The journey of a team of engineers in learning packaging technology Vollum Lecture HallPatrick Durand • Valentin Marcon • Laure Quintric

10:20am PDT

Break PAB Atrium Sponsors PAB Atrium

10:50am PDT

BOSC: Session 2: Translational & Medical Informatics Vollum Lecture HallHilmar Lapp

11:05am PDT

The Human Cell Atlas Data Coordination Platform: an open source, cloud-based system for ingesting, storing, analyzing, discovering, and exploring single-cell data Vollum Lecture HallBrian O'Connor

11:20am PDT

Open Humans - connecting, sharing and analyzing personal data that enables community-driven research Vollum Lecture HallBastian Greshake Tzovaras

11:40am PDT

Enabling Machine Learning at Scale with “Tiled” Human Genomes Vollum Lecture HallSarah Wait Zaranek

11:45am PDT

JASS: a free and open source software for the joint analysis and interactive analysis of GWAS results Vollum Lecture HallHervé Ménager

11:50am PDT

Building a community menagerie of automated variant validations Vollum Lecture HallBrad Chapman

11:55am PDT

Variant Transforms: Loading VCF files into BigQuery for large scale data analysis Vollum Lecture HallAsha Rostamianfar

12:00pm PDT

Q&A for lightning talks in this session ⚡ Vollum Lecture Hall

12:10pm PDT

Lunch, sponsored by Lenovo + Intel PAB Atrium Sponsors PAB Atrium

1:40pm PDT

BOSC Session 3: All About Data Vollum Lecture HallBastian Greshake Tzovaras