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GCC BOSC 2018
The
2018 Galaxy Community Conference (GCC2018)
and
Bioinformatics Open Source Conference 2018 (BOSC2018)
are meeting together in
Portland, Oregon
, United States, June 25-30, 2018. There are
two days of training
, a
two day meeting
, and
two to four days of intense collaboration
. The meeting will feature
joint & parallel sessions
,
shared keynotes
,
poster
&
demo
sessions,
birds-of-a-feather
, and social events. GCCBOSC brings together the widest possible community of bioinformatics developers and practitioners into a single event. GCCBOSC is organized by
Oregon Health & Science University
and will be at
Reed College
.
Registration
and
lodging
information
Childcare is available
at Portland State University
Submit an abstract
(
guidelines
, GCC accepting lightning/poster/demos through April 16)
Sponsorships
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B.g Conference - GCC
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C. CollaborationFest
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Sunday
, June 24
PAB Atrium
3:00pm •
Conference desk open
Monday
, June 25
PAB 105
9:00am •
Intro to Galaxy Administration 1
12:30pm •
Intro to Galaxy Administration 2
3:30pm •
Intro to Galaxy Administration 3
PAB 320
9:00am •
Galaxy 101 - A gentle introduction to using Galaxy
12:30pm •
RNA-Seq Analysis with Galaxy
3:30pm •
Galaxy For Proteogenomics !
7:30pm •
Bioinformatics Training and Education with the Galaxy Training Network
PAB Atrium
8:00am •
Conference desk open
Performing Arts Building
TBA •
Training Day 1 - Galaxy
Reed Commons Cafe
11:30am •
Lunch
3:00pm •
Break
TBA
6:00pm •
Dinner on your own
Tuesday
, June 26
Reed Commons Cafe
11:30am •
Lunch
TBA
TBA •
Training Day 2 - All topics
3:00pm •
Break
6:20pm •
Birds-of-a-Feather (BoFs), With Your Dinner!
Training Venue 1
9:00am •
Conda and Containers
12:30pm •
Galaxy Interactive Environments
3:30pm •
Command line workflow management systems: Snakemake and Nextflow
Training Venue 2
9:00am •
Community built analyses that run everywhere with bcbio
12:30pm •
Introduction to Common Workflow Language
3:30pm •
GATK4: What's new and how to run it
Training Venue 3
9:00am •
WDL: the Workflow Description Language
12:30pm •
Setting up for success: Everything you need to know when planning for an RNA-seq analysis I
3:30pm •
Setting up for success: Everything you need to know when planning for an RNA-seq analysis II
Training Venue 4
9:00am •
Handling integrated biological data using Python (or R) and InterMine
12:30pm •
Practical use of the Galaxy API command line tools
3:30pm •
Galaxy Architecture
Training Venue 5
9:00am •
Data Carpentry Genomics Workshop: Data Organization and Automation with Shell I
12:30pm •
Data Carpentry Genomics Workshop: Data Organization and Automation with Shell II
3:30pm •
Data Carpentry Genomics Workshop: Data Organization and Automation with Shell III
Vollum College Center Lobby
8:00am •
Conference desk open
Vollum Lecture Hall
8:00pm •
Joint BOSC & GCC: Opening Session
8:10pm •
Opening Keynote: Tracy K. Teal
Wednesday
, June 27
Eliot Chapel
10:50am •
BOSC: Session 2
1:40pm •
BOSC Session 3
PAB Atrium
8:00am •
Help Desk Open
10:20am •
Sponsors
10:20am •
Break
12:10pm •
Lunch
12:10pm •
Help Desk Open
12:10pm •
Sponsors
3:00pm •
Posters
3:00pm •
Demos
3:00pm •
Help Desk Open
3:00pm •
Sponsors
Performing Arts Building
12:30pm •
BoF: JBrowse
12:30pm •
Birds-of-a-Feather (BoFs), with Lunch!
TBA
5:40pm •
Birds-of-a-Feather (BoFs), With Your Dinner!
5:40pm •
Dinner on your own (or join a BoF)
8:00pm •
Birds-of-a-Feather (BoFs), wherever you want!
Vollum College Center Lobby
8:00am •
Conference desk open
Vollum Lecture Hall
9:00am •
Keynote: Fernando Pérez
9:00am •
Joint BOSC & GCC Session 1
10:00am •
The journey of a team of engineers in learning packaging technology
10:50am •
Storage Media Federation for Galaxy
10:50am •
GCC Session 2: Galaxy Infrastructure
11:10am •
From laptop to super-computer: standardizing installation and management of Galaxy
11:30am •
Testing Wide-Area Lustre File Systems for Sharing load in Galaxy
11:50am •
Lightning Talks ⚡
1:40pm •
GCC Session 3: Challenges & Opportunities
1:40pm •
Galaksio, a more user friendly interface for Galaxy using workflows
2:00pm •
Large scale analyses with improved dataset collections
2:20pm •
A fruitful year for the Galaxy Training materials
2:40pm •
The usegalaxy.* servers: democratizing computational resources for life sciences at a new level
4:00pm •
Improving the Bioinformatics Curriculum
4:00pm •
Session 4 - Joint BOSC & GCC
4:20pm •
Panel: Training and Documentation in Bioinformatics
Thursday
, June 28
Eliot Chapel
9:00am •
BOSC Session 5
10:50am •
BOSC Session 6
1:40pm •
BOSC Session 7
PAB Atrium
8:00am •
Help Desk Open
10:20am •
Break
10:20am •
Sponsors
12:10pm •
Help Desk Open
12:10pm •
Sponsors
12:10pm •
Lunch
3:00pm •
Sponsors
3:00pm •
Posters
3:00pm •
Help Desk Open
3:00pm •
Demos
Performing Arts Building
12:30pm •
Birds-of-a-Feather (BoFs), with Lunch!
5:40pm •
Birds-of-a-Feather (BoFs), the Final Flight!
TBA
7:00pm •
Conference Dinner!
Vollum College Center Lobby
8:00am •
Conference desk open
9:20am •
G-OnRamp: Create UCSC Assembly Hubs and JBrowse/Apollo Archives for Collaborative Eukaryotic Genome Annotations
5:20pm •
Conference desk open
Vollum Lecture Hall
9:00am •
Galaxy Enables Integrated Analysis of Phenotypic, Genotypic, and Environmental Data for Geo-referenced Trees in CartograTree
9:00am •
GCC Session 5: Galaxy in situ
9:40am •
Canada's Integrated Rapid Infectious Disease Analysis Platform (IRIDA)
10:00am •
Galaxy in a proteomics core facility
10:50am •
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes
10:50am •
GCC Session 6: Galaxy in situ
11:10am •
GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline
11:30am •
Galaxy HiCExplorer: HiCExplorer, deepTools3 and pyGenomeTracks
11:50am •
Lightning Talks ⚡
1:40pm •
Galaxy Community Update
1:40pm •
GCC Session 7
2:10pm •
Lightning Talks ⚡
4:00pm •
Session 8 - Joint BOSC & GCC Closing
4:00pm •
Closing Keynote: Confound it! Reproducible biology from "omics" data analysis
5:00pm •
Conference Closing
Friday
, June 29
Performing Arts Building
9:00am •
GCC OBF CollaborationFest: Core
Saturday
, June 30
Performing Arts Building
9:00am •
GCC OBF CollaborationFest: Core
Sunday
, July 1
Performing Arts Building
9:00am •
GCC OBF CollaborationFest: Encore
Monday
, July 2
Performing Arts Building
9:00am •
GCC OBF CollaborationFest: Encore
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Southeast Reed College Place, Portland, Oregon, United States
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